miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 88676 0.73 0.763244
Target:  5'- --cGCGACGGCGGCGGGcuccgcugccGGCGGUGGCg -3'
miRNA:   3'- uguCGUUGUCGUCGUUC----------UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 58311 0.72 0.810362
Target:  5'- gGCGGCGGCGGCGGC-GGAGgGGUc-- -3'
miRNA:   3'- -UGUCGUUGUCGUCGuUCUCgUCGuug -5'
15674 3' -52.3 NC_004065.1 + 73978 0.86 0.190455
Target:  5'- gGCGGCAGCAGUGGCGccAGCAGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 164951 0.81 0.384292
Target:  5'- cCGGCGGCGGCGGCGGcAGCAGCuGCg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUcUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 36226 0.78 0.505332
Target:  5'- cUAGUAAguGaGGCAGGAGCAGCGGCg -3'
miRNA:   3'- uGUCGUUguCgUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97339 0.78 0.51535
Target:  5'- cGCGGagaCAGCAGCAGCAccAGCAGCAAUc -3'
miRNA:   3'- -UGUC---GUUGUCGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 159942 0.77 0.556158
Target:  5'- gGCGGCGACGGCGGCGAGgAGC-GCcuCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUC-UCGuCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 20254 0.76 0.5968
Target:  5'- uCAGCAACAGCAGUcgcGGAcgcacacGCAGCAGCn -3'
miRNA:   3'- uGUCGUUGUCGUCGu--UCU-------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 122510 0.76 0.639962
Target:  5'- uCGGUGuCGGC-GCGGGAGCAGCGGCg -3'
miRNA:   3'- uGUCGUuGUCGuCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 179134 0.75 0.681966
Target:  5'- uACAGgGGgAGCAGUAGGAGUgaagacAGCAGCa -3'
miRNA:   3'- -UGUCgUUgUCGUCGUUCUCG------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 70445 0.68 0.966733
Target:  5'- cCGGCAGCAGCAccuucugcuGCcAGccCAGCAACg -3'
miRNA:   3'- uGUCGUUGUCGU---------CGuUCucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 135156 0.68 0.959791
Target:  5'- uGCAGCAcCAcGCugaaGGCGAGuccGUAGCGACa -3'
miRNA:   3'- -UGUCGUuGU-CG----UCGUUCu--CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97878 0.72 0.845033
Target:  5'- uGCcGCAAgGGCGGCucuucGGCAGCGGCg -3'
miRNA:   3'- -UGuCGUUgUCGUCGuuc--UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 167221 0.71 0.864295
Target:  5'- gGCGGC-GCAGUcGCAGGAGUcgccggucgccggcgAGCGACg -3'
miRNA:   3'- -UGUCGuUGUCGuCGUUCUCG---------------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 23132 0.71 0.876432
Target:  5'- gGCuGCGACAGCAGCGu--GCuGCGAa -3'
miRNA:   3'- -UGuCGUUGUCGUCGUucuCGuCGUUg -5'
15674 3' -52.3 NC_004065.1 + 34620 0.7 0.890769
Target:  5'- cCGGCAGCcgAGCGGCGgAGGGUGGCGu- -3'
miRNA:   3'- uGUCGUUG--UCGUCGU-UCUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 1444 0.69 0.922335
Target:  5'- --cGUAGCAGUAGUAccccGGCAGCGGCg -3'
miRNA:   3'- uguCGUUGUCGUCGUuc--UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 21741 0.69 0.927895
Target:  5'- uGCGGCAACAGCGGCAccuGCGuGUggAACu -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucuCGU-CG--UUG- -5'
15674 3' -52.3 NC_004065.1 + 225800 0.69 0.947606
Target:  5'- --cGCAACAGUcGCcauuGAGGGCcAGCAGCu -3'
miRNA:   3'- uguCGUUGUCGuCG----UUCUCG-UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 54707 0.68 0.95191
Target:  5'- cGCGGCAgaccgcgcgcgaACAGCgAGCGAGAGgcugaGGCGAa -3'
miRNA:   3'- -UGUCGU------------UGUCG-UCGUUCUCg----UCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.