miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 65897 0.71 0.861171
Target:  5'- gGCGGCAGCGGCAGCGGGuccGuCAGguccuccuggucCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCu--C-GUC------------GUUG- -5'
15674 3' -52.3 NC_004065.1 + 178774 0.71 0.876432
Target:  5'- -aAGCAACAGCAGCAGcaGGCcccuAGCAAg -3'
miRNA:   3'- ugUCGUUGUCGUCGUUc-UCG----UCGUUg -5'
15674 3' -52.3 NC_004065.1 + 170709 0.71 0.883719
Target:  5'- --uGCGGCGGCAGCGAaGGCgccuccGGCGGCg -3'
miRNA:   3'- uguCGUUGUCGUCGUUcUCG------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 127781 0.7 0.904141
Target:  5'- cACGGCGACGG-GGCccauGAGCAGgCGGCa -3'
miRNA:   3'- -UGUCGUUGUCgUCGuu--CUCGUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 176344 0.69 0.922335
Target:  5'- cGCuuGCGGCGGCuucuCGAG-GCAGCAGCa -3'
miRNA:   3'- -UGu-CGUUGUCGuc--GUUCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 225800 0.69 0.947606
Target:  5'- --cGCAACAGUcGCcauuGAGGGCcAGCAGCu -3'
miRNA:   3'- uguCGUUGUCGuCG----UUCUCG-UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 54707 0.68 0.95191
Target:  5'- cGCGGCAgaccgcgcgcgaACAGCgAGCGAGAGgcugaGGCGAa -3'
miRNA:   3'- -UGUCGU------------UGUCG-UCGUUCUCg----UCGUUg -5'
15674 3' -52.3 NC_004065.1 + 179134 0.75 0.681966
Target:  5'- uACAGgGGgAGCAGUAGGAGUgaagacAGCAGCa -3'
miRNA:   3'- -UGUCgUUgUCGUCGUUCUCG------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 122510 0.76 0.639962
Target:  5'- uCGGUGuCGGC-GCGGGAGCAGCGGCg -3'
miRNA:   3'- uGUCGUuGUCGuCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 20254 0.76 0.5968
Target:  5'- uCAGCAACAGCAGUcgcGGAcgcacacGCAGCAGCn -3'
miRNA:   3'- uGUCGUUGUCGUCGu--UCU-------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 37429 0.67 0.969866
Target:  5'- uCGGUGACGGCGGC-GGAGUuGCuGACa -3'
miRNA:   3'- uGUCGUUGUCGUCGuUCUCGuCG-UUG- -5'
15674 3' -52.3 NC_004065.1 + 69300 0.67 0.977995
Target:  5'- cCAGCAucucCGGCGGCGGcGGGCuGCuGCu -3'
miRNA:   3'- uGUCGUu---GUCGUCGUU-CUCGuCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 88616 0.66 0.98243
Target:  5'- uGCcGCGGCcGCGGaCGAGAGCGGUc-- -3'
miRNA:   3'- -UGuCGUUGuCGUC-GUUCUCGUCGuug -5'
15674 3' -52.3 NC_004065.1 + 170506 0.66 0.986156
Target:  5'- -uGGCGGCGGCGGCcacGGCcacgauaccggGGCAACg -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCG-----------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 63776 0.66 0.986156
Target:  5'- cGCGGCGaucuACGGCcGCGAGGGCgaGGCc-- -3'
miRNA:   3'- -UGUCGU----UGUCGuCGUUCUCG--UCGuug -5'
15674 3' -52.3 NC_004065.1 + 73978 0.86 0.190455
Target:  5'- gGCGGCAGCAGUGGCGccAGCAGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 164951 0.81 0.384292
Target:  5'- cCGGCGGCGGCGGCGGcAGCAGCuGCg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUcUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 36226 0.78 0.505332
Target:  5'- cUAGUAAguGaGGCAGGAGCAGCGGCg -3'
miRNA:   3'- uGUCGUUguCgUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97339 0.78 0.51535
Target:  5'- cGCGGagaCAGCAGCAGCAccAGCAGCAAUc -3'
miRNA:   3'- -UGUC---GUUGUCGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 159942 0.77 0.556158
Target:  5'- gGCGGCGACGGCGGCGAGgAGC-GCcuCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUC-UCGuCGuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.