miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 97339 0.78 0.51535
Target:  5'- cGCGGagaCAGCAGCAGCAccAGCAGCAAUc -3'
miRNA:   3'- -UGUC---GUUGUCGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 159942 0.77 0.556158
Target:  5'- gGCGGCGACGGCGGCGAGgAGC-GCcuCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUC-UCGuCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 20254 0.76 0.5968
Target:  5'- uCAGCAACAGCAGUcgcGGAcgcacacGCAGCAGCn -3'
miRNA:   3'- uGUCGUUGUCGUCGu--UCU-------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 122510 0.76 0.639962
Target:  5'- uCGGUGuCGGC-GCGGGAGCAGCGGCg -3'
miRNA:   3'- uGUCGUuGUCGuCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 179134 0.75 0.681966
Target:  5'- uACAGgGGgAGCAGUAGGAGUgaagacAGCAGCa -3'
miRNA:   3'- -UGUCgUUgUCGUCGUUCUCG------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 139036 0.73 0.772954
Target:  5'- cGCAG-AACAGCAGCcAGAGCA-CGGCc -3'
miRNA:   3'- -UGUCgUUGUCGUCGuUCUCGUcGUUG- -5'
15674 3' -52.3 NC_004065.1 + 77504 0.67 0.980305
Target:  5'- cCGGCGcCGGCGGagcccgAGGAGCuGCGGCu -3'
miRNA:   3'- uGUCGUuGUCGUCg-----UUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 163479 0.67 0.980305
Target:  5'- -gAGCuccguCGGCGGCGccGGuGGCGGCGGCu -3'
miRNA:   3'- ugUCGuu---GUCGUCGU--UC-UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 166138 0.67 0.977994
Target:  5'- gGCAGaGACGuCGGCGccGGCGGCAGCg -3'
miRNA:   3'- -UGUCgUUGUcGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 90361 0.67 0.981177
Target:  5'- gACAGCAGCGGCcgccGCAcgcgccgcacagcuuGGAGcCGGCGu- -3'
miRNA:   3'- -UGUCGUUGUCGu---CGU---------------UCUC-GUCGUug -5'
15674 3' -52.3 NC_004065.1 + 41901 0.66 0.98243
Target:  5'- uCAGCAGCuccccggaGGguGCAAGcugguGGCGGUGACc -3'
miRNA:   3'- uGUCGUUG--------UCguCGUUC-----UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 178718 0.71 0.856419
Target:  5'- -gGGCAGCGGCGGCAuaccucuucgcagagGGAGguGUGAa -3'
miRNA:   3'- ugUCGUUGUCGUCGU---------------UCUCguCGUUg -5'
15674 3' -52.3 NC_004065.1 + 33696 0.71 0.86117
Target:  5'- gUAGCcguACAGCAGCGAGAugGCguacuguauGGCGACg -3'
miRNA:   3'- uGUCGu--UGUCGUCGUUCU--CG---------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 78578 0.71 0.868914
Target:  5'- -gAGCGACAGUGGCAA---CAGCGACg -3'
miRNA:   3'- ugUCGUUGUCGUCGUUcucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 43566 0.71 0.876432
Target:  5'- aACAGCAGCAcCAGCAacaacaacAGGGCGGCn-- -3'
miRNA:   3'- -UGUCGUUGUcGUCGU--------UCUCGUCGuug -5'
15674 3' -52.3 NC_004065.1 + 113767 0.71 0.876432
Target:  5'- gACAGC-GCGGCGGCAGacgaccgacucGGGCGGCuuCu -3'
miRNA:   3'- -UGUCGuUGUCGUCGUU-----------CUCGUCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 62476 0.75 0.661013
Target:  5'- gACGGCAGgAGCGGCcgcGGCGGUAGCg -3'
miRNA:   3'- -UGUCGUUgUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62368 0.81 0.384292
Target:  5'- gACGGCggUGGCGGCGGGGGUGGUGGCg -3'
miRNA:   3'- -UGUCGuuGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 37160 0.71 0.876432
Target:  5'- uCGGCGGCAGCAGUGu---CAGCAACu -3'
miRNA:   3'- uGUCGUUGUCGUCGUucucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 140184 0.76 0.608357
Target:  5'- aACAaCAACAGCGGCAGuAGCAGCAc- -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.