miRNA display CGI


Results 121 - 140 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 113767 0.71 0.876432
Target:  5'- gACAGC-GCGGCGGCAGacgaccgacucGGGCGGCuuCu -3'
miRNA:   3'- -UGUCGuUGUCGUCGUU-----------CUCGUCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 69034 0.66 0.98323
Target:  5'- gAUAGCAGCAGCAGCccgccgccgccgGAGAugcuggauauguuacGCAcGCAGa -3'
miRNA:   3'- -UGUCGUUGUCGUCG------------UUCU---------------CGU-CGUUg -5'
15674 3' -52.3 NC_004065.1 + 104980 0.66 0.98243
Target:  5'- -gAGUAACGGCuGaUGAGAGUcGCAACg -3'
miRNA:   3'- ugUCGUUGUCGuC-GUUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 140184 0.76 0.608357
Target:  5'- aACAaCAACAGCGGCAGuAGCAGCAc- -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 128416 0.76 0.602049
Target:  5'- gGCAGCGGCGGCGGCGccgccaccgagucuGAGC-GCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUu-------------CUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 78578 0.71 0.868914
Target:  5'- -gAGCGACAGUGGCAA---CAGCGACg -3'
miRNA:   3'- ugUCGUUGUCGUCGUUcucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 26630 0.76 0.608357
Target:  5'- uGCGGCGACAGCG---GGAGCAGCGu- -3'
miRNA:   3'- -UGUCGUUGUCGUcguUCUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 62368 0.81 0.384292
Target:  5'- gACGGCggUGGCGGCGGGGGUGGUGGCg -3'
miRNA:   3'- -UGUCGuuGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 200453 0.67 0.972783
Target:  5'- cGCGGCcgccguCAGaUAGCGGGAGC-GCGGCc -3'
miRNA:   3'- -UGUCGuu----GUC-GUCGUUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 139599 0.67 0.972783
Target:  5'- cGCGGCGAUcGCcguuGGCAaggcgcagaugcGGAGCGGUGGCg -3'
miRNA:   3'- -UGUCGUUGuCG----UCGU------------UCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 115059 0.67 0.97549
Target:  5'- -gGGCAACGGCGcgcGCGAGGacGCGGCcuCg -3'
miRNA:   3'- ugUCGUUGUCGU---CGUUCU--CGUCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 188735 0.67 0.97549
Target:  5'- aAUAGCAggcgcACGGCGGCGaagcccaccAGGGCGaucGCGACc -3'
miRNA:   3'- -UGUCGU-----UGUCGUCGU---------UCUCGU---CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 164223 0.67 0.976515
Target:  5'- aGCcGCAugACGGCGGUgaagucgggaucugaGGGAGCGgGCAACa -3'
miRNA:   3'- -UGuCGU--UGUCGUCG---------------UUCUCGU-CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 89311 0.67 0.977994
Target:  5'- -gAGC-GCGGCAGCGAGuucuGCAG-GACg -3'
miRNA:   3'- ugUCGuUGUCGUCGUUCu---CGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 166138 0.67 0.977994
Target:  5'- gGCAGaGACGuCGGCGccGGCGGCAGCg -3'
miRNA:   3'- -UGUCgUUGUcGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 77504 0.67 0.980305
Target:  5'- cCGGCGcCGGCGGagcccgAGGAGCuGCGGCu -3'
miRNA:   3'- uGUCGUuGUCGUCg-----UUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 163479 0.67 0.980305
Target:  5'- -gAGCuccguCGGCGGCGccGGuGGCGGCGGCu -3'
miRNA:   3'- ugUCGuu---GUCGUCGU--UC-UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 90361 0.67 0.981177
Target:  5'- gACAGCAGCGGCcgccGCAcgcgccgcacagcuuGGAGcCGGCGu- -3'
miRNA:   3'- -UGUCGUUGUCGu---CGU---------------UCUC-GUCGUug -5'
15674 3' -52.3 NC_004065.1 + 41901 0.66 0.98243
Target:  5'- uCAGCAGCuccccggaGGguGCAAGcugguGGCGGUGACc -3'
miRNA:   3'- uGUCGUUG--------UCguCGUUC-----UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 141674 0.67 0.972783
Target:  5'- gGCAGCGACGaCAuGCGGGAGCcuauGGCGc- -3'
miRNA:   3'- -UGUCGUUGUcGU-CGUUCUCG----UCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.