miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15675 3' -55.2 NC_004065.1 + 75599 0.66 0.969339
Target:  5'- uCGGGCAccgUGAGGaCGAAcGCGA-CGGAc -3'
miRNA:   3'- -GCCUGUu--GCUCC-GCUUuCGCUcGCCU- -5'
15675 3' -55.2 NC_004065.1 + 111216 0.66 0.969339
Target:  5'- -cGACGGCGaAGGUGGAGGUGAcgaGGAu -3'
miRNA:   3'- gcCUGUUGC-UCCGCUUUCGCUcg-CCU- -5'
15675 3' -55.2 NC_004065.1 + 19693 0.66 0.969339
Target:  5'- cCGGGUAACGGcugaaacGCGGAGGCGuGCGGc -3'
miRNA:   3'- -GCCUGUUGCUc------CGCUUUCGCuCGCCu -5'
15675 3' -55.2 NC_004065.1 + 117213 0.66 0.974735
Target:  5'- aGGugAugGCGGGGaCGGAcgucGCGAGCGa- -3'
miRNA:   3'- gCCugU--UGCUCC-GCUUu---CGCUCGCcu -5'
15675 3' -55.2 NC_004065.1 + 58583 0.66 0.971861
Target:  5'- gCGGAugagcucgcCGACGAcGGCGGAGucgagaucgacgcGCGcGGCGGAg -3'
miRNA:   3'- -GCCU---------GUUGCU-CCGCUUU-------------CGC-UCGCCU- -5'
15675 3' -55.2 NC_004065.1 + 75206 0.66 0.972131
Target:  5'- gCGGACGAUGGacuuGaCGAGGGCcGAGCaGGAg -3'
miRNA:   3'- -GCCUGUUGCUc---C-GCUUUCG-CUCG-CCU- -5'
15675 3' -55.2 NC_004065.1 + 151650 0.66 0.969339
Target:  5'- aGGugAACGcggucGGCGAGGGCGAcGUGc- -3'
miRNA:   3'- gCCugUUGCu----CCGCUUUCGCU-CGCcu -5'
15675 3' -55.2 NC_004065.1 + 132154 0.66 0.966353
Target:  5'- aGGAUcGCGcccAGGUGAGGGUGGaacuGCGGGu -3'
miRNA:   3'- gCCUGuUGC---UCCGCUUUCGCU----CGCCU- -5'
15675 3' -55.2 NC_004065.1 + 79208 0.66 0.969339
Target:  5'- aGGACGcguACGGGGUGAGccuggacaucGCGcaccAGCGGAu -3'
miRNA:   3'- gCCUGU---UGCUCCGCUUu---------CGC----UCGCCU- -5'
15675 3' -55.2 NC_004065.1 + 74044 0.66 0.971861
Target:  5'- cCGGAgugcgaGACGAGGCGGAGGagcuucuCGA-CGGAu -3'
miRNA:   3'- -GCCUg-----UUGCUCCGCUUUC-------GCUcGCCU- -5'
15675 3' -55.2 NC_004065.1 + 143828 0.66 0.974735
Target:  5'- gGGGCGAacaaggGAGGCGGAA---AGCGGAc -3'
miRNA:   3'- gCCUGUUg-----CUCCGCUUUcgcUCGCCU- -5'
15675 3' -55.2 NC_004065.1 + 64202 0.66 0.974735
Target:  5'- -aGGCGGCG-GGCGGAGGCagugucGGCGGc -3'
miRNA:   3'- gcCUGUUGCuCCGCUUUCGc-----UCGCCu -5'
15675 3' -55.2 NC_004065.1 + 68203 0.66 0.972132
Target:  5'- cCGG-CAGCGAcuGCGu-GGCGGuGCGGAa -3'
miRNA:   3'- -GCCuGUUGCUc-CGCuuUCGCU-CGCCU- -5'
15675 3' -55.2 NC_004065.1 + 120374 0.66 0.969339
Target:  5'- gGGACGGCGccGGCGAgucAAGCGccguaCGGAc -3'
miRNA:   3'- gCCUGUUGCu-CCGCU---UUCGCuc---GCCU- -5'
15675 3' -55.2 NC_004065.1 + 116826 0.66 0.977157
Target:  5'- gGGGCAGCGuGGCcguGAugguGGUGcAGUGGGu -3'
miRNA:   3'- gCCUGUUGCuCCG---CUu---UCGC-UCGCCU- -5'
15675 3' -55.2 NC_004065.1 + 229577 0.66 0.974735
Target:  5'- cCGGACGuuACGccGCGAGGGCGgcuccAGgGGGu -3'
miRNA:   3'- -GCCUGU--UGCucCGCUUUCGC-----UCgCCU- -5'
15675 3' -55.2 NC_004065.1 + 53698 0.66 0.967572
Target:  5'- uCGGGCAcgaccaccgucgguCGGGGCGAGAaCGAcGUGGGg -3'
miRNA:   3'- -GCCUGUu-------------GCUCCGCUUUcGCU-CGCCU- -5'
15675 3' -55.2 NC_004065.1 + 124041 0.66 0.973195
Target:  5'- aGGACGugGAcgccuggguccgacaGGCGAccGGCGcGCGGc -3'
miRNA:   3'- gCCUGUugCU---------------CCGCUu-UCGCuCGCCu -5'
15675 3' -55.2 NC_004065.1 + 30075 0.66 0.977157
Target:  5'- -uGAUGGCGGcGGUGGAAGCGAggccaGCGGu -3'
miRNA:   3'- gcCUGUUGCU-CCGCUUUCGCU-----CGCCu -5'
15675 3' -55.2 NC_004065.1 + 98261 0.66 0.977157
Target:  5'- gGGACGGCGgcccuGGGCGc--GCGccucGCGGAu -3'
miRNA:   3'- gCCUGUUGC-----UCCGCuuuCGCu---CGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.