Results 21 - 40 of 188 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 124041 | 0.66 | 0.973195 |
Target: 5'- aGGACGugGAcgccuggguccgacaGGCGAccGGCGcGCGGc -3' miRNA: 3'- gCCUGUugCU---------------CCGCUu-UCGCuCGCCu -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 68203 | 0.66 | 0.972132 |
Target: 5'- cCGG-CAGCGAcuGCGu-GGCGGuGCGGAa -3' miRNA: 3'- -GCCuGUUGCUc-CGCuuUCGCU-CGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 75206 | 0.66 | 0.972131 |
Target: 5'- gCGGACGAUGGacuuGaCGAGGGCcGAGCaGGAg -3' miRNA: 3'- -GCCUGUUGCUc---C-GCUUUCG-CUCG-CCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 58583 | 0.66 | 0.971861 |
Target: 5'- gCGGAugagcucgcCGACGAcGGCGGAGucgagaucgacgcGCGcGGCGGAg -3' miRNA: 3'- -GCCU---------GUUGCU-CCGCUUU-------------CGC-UCGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 74044 | 0.66 | 0.971861 |
Target: 5'- cCGGAgugcgaGACGAGGCGGAGGagcuucuCGA-CGGAu -3' miRNA: 3'- -GCCUg-----UUGCUCCGCUUUC-------GCUcGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 202386 | 0.66 | 0.969339 |
Target: 5'- -aGACAucGCGcacgagacGGGCGGAcgaAGCGgAGCGGAg -3' miRNA: 3'- gcCUGU--UGC--------UCCGCUU---UCGC-UCGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 90240 | 0.66 | 0.969339 |
Target: 5'- aGGuCGGCGucGGCGAAGGCccGCGaGAg -3' miRNA: 3'- gCCuGUUGCu-CCGCUUUCGcuCGC-CU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 79208 | 0.66 | 0.969339 |
Target: 5'- aGGACGcguACGGGGUGAGccuggacaucGCGcaccAGCGGAu -3' miRNA: 3'- gCCUGU---UGCUCCGCUUu---------CGC----UCGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 19693 | 0.66 | 0.969339 |
Target: 5'- cCGGGUAACGGcugaaacGCGGAGGCGuGCGGc -3' miRNA: 3'- -GCCUGUUGCUc------CGCUUUCGCuCGCCu -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 75599 | 0.66 | 0.969339 |
Target: 5'- uCGGGCAccgUGAGGaCGAAcGCGA-CGGAc -3' miRNA: 3'- -GCCUGUu--GCUCC-GCUUuCGCUcGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 120374 | 0.66 | 0.969339 |
Target: 5'- gGGACGGCGccGGCGAgucAAGCGccguaCGGAc -3' miRNA: 3'- gCCUGUUGCu-CCGCU---UUCGCuc---GCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 150541 | 0.66 | 0.969339 |
Target: 5'- uCGGGCaAGCGGcGGCuGAAGCGuuucaucuacGCGGAg -3' miRNA: 3'- -GCCUG-UUGCU-CCGcUUUCGCu---------CGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 151650 | 0.66 | 0.969339 |
Target: 5'- aGGugAACGcggucGGCGAGGGCGAcGUGc- -3' miRNA: 3'- gCCugUUGCu----CCGCUUUCGCU-CGCcu -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 111216 | 0.66 | 0.969339 |
Target: 5'- -cGACGGCGaAGGUGGAGGUGAcgaGGAu -3' miRNA: 3'- gcCUGUUGC-UCCGCUUUCGCUcg-CCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 53698 | 0.66 | 0.967572 |
Target: 5'- uCGGGCAcgaccaccgucgguCGGGGCGAGAaCGAcGUGGGg -3' miRNA: 3'- -GCCUGUu-------------GCUCCGCUUUcGCU-CGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 24848 | 0.66 | 0.966354 |
Target: 5'- cCGG-CGGCGGcGGUGgcGGCGAcgacacgcGCGGAc -3' miRNA: 3'- -GCCuGUUGCU-CCGCuuUCGCU--------CGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 26452 | 0.66 | 0.966354 |
Target: 5'- uCGGACAGgcguuCGAGGuCGAAAGgGAcGCGc- -3' miRNA: 3'- -GCCUGUU-----GCUCC-GCUUUCgCU-CGCcu -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 132154 | 0.66 | 0.966353 |
Target: 5'- aGGAUcGCGcccAGGUGAGGGUGGaacuGCGGGu -3' miRNA: 3'- gCCUGuUGC---UCCGCUUUCGCU----CGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 67129 | 0.66 | 0.966353 |
Target: 5'- uGGACAGCGGcGCGcgccuGGAcGCGAucGCGGAc -3' miRNA: 3'- gCCUGUUGCUcCGC-----UUU-CGCU--CGCCU- -5' |
|||||||
15675 | 3' | -55.2 | NC_004065.1 | + | 225162 | 0.66 | 0.966353 |
Target: 5'- gGGugAcCGAGcCGAGGGCG-GCGGu -3' miRNA: 3'- gCCugUuGCUCcGCUUUCGCuCGCCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home