miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15675 5' -61.6 NC_004065.1 + 151930 0.66 0.79893
Target:  5'- cGCCGCGcGCUGgcgGUagaGCUCGCUg-UCg -3'
miRNA:   3'- -CGGCGC-CGGCa--CAg--CGAGCGGagAGa -5'
15675 5' -61.6 NC_004065.1 + 113438 0.66 0.79893
Target:  5'- aGCgGCGGCCGgggGgccCGCcgUGCCcCUCa -3'
miRNA:   3'- -CGgCGCCGGCa--Ca--GCGa-GCGGaGAGa -5'
15675 5' -61.6 NC_004065.1 + 109440 0.66 0.79893
Target:  5'- cGCUgGCGGCgCGUGUa--UCGCCUCa-- -3'
miRNA:   3'- -CGG-CGCCG-GCACAgcgAGCGGAGaga -5'
15675 5' -61.6 NC_004065.1 + 31272 0.66 0.79893
Target:  5'- gGCCGCGGCCGagGgcaaGCUCGaacaguggCUCa -3'
miRNA:   3'- -CGGCGCCGGCa-Cag--CGAGCgga-----GAGa -5'
15675 5' -61.6 NC_004065.1 + 163892 0.66 0.79893
Target:  5'- uGCCGCuGCCGccGcCGC-CGCCgCUCg -3'
miRNA:   3'- -CGGCGcCGGCa-CaGCGaGCGGaGAGa -5'
15675 5' -61.6 NC_004065.1 + 83292 0.66 0.790485
Target:  5'- cGCgGCGGCCGac-CGCU-GCCUCg-- -3'
miRNA:   3'- -CGgCGCCGGCacaGCGAgCGGAGaga -5'
15675 5' -61.6 NC_004065.1 + 191076 0.66 0.790485
Target:  5'- cCCGC-GCCG-GUCGCUCGag-CUCg -3'
miRNA:   3'- cGGCGcCGGCaCAGCGAGCggaGAGa -5'
15675 5' -61.6 NC_004065.1 + 192386 0.66 0.781916
Target:  5'- gGCCgucugGCGGCCG--UCGCUUGUUUCUUc -3'
miRNA:   3'- -CGG-----CGCCGGCacAGCGAGCGGAGAGa -5'
15675 5' -61.6 NC_004065.1 + 66383 0.66 0.781916
Target:  5'- uCCGCGGCCcag-CGCgccagCGCCUCg-- -3'
miRNA:   3'- cGGCGCCGGcacaGCGa----GCGGAGaga -5'
15675 5' -61.6 NC_004065.1 + 96923 0.66 0.773229
Target:  5'- uGCUGUGGugaCCGUuagacUCGCgcugCGCCUCUCc -3'
miRNA:   3'- -CGGCGCC---GGCAc----AGCGa---GCGGAGAGa -5'
15675 5' -61.6 NC_004065.1 + 17424 0.66 0.773229
Target:  5'- gGCaagaGCGGUCGUuUgGCg-GCCUCUCUg -3'
miRNA:   3'- -CGg---CGCCGGCAcAgCGagCGGAGAGA- -5'
15675 5' -61.6 NC_004065.1 + 61945 0.66 0.773229
Target:  5'- cGCCGCGGaCGUGaCGCgcugcggaccccUCGCgCUCUa- -3'
miRNA:   3'- -CGGCGCCgGCACaGCG------------AGCG-GAGAga -5'
15675 5' -61.6 NC_004065.1 + 97019 0.66 0.773229
Target:  5'- gGCCGCGaugccgccuccGCCGUcgcccUGCUCGCC-CUCg -3'
miRNA:   3'- -CGGCGC-----------CGGCAca---GCGAGCGGaGAGa -5'
15675 5' -61.6 NC_004065.1 + 172893 0.66 0.764433
Target:  5'- uGCCGUcGCCGUGaUCGUU-GCUUUUCUu -3'
miRNA:   3'- -CGGCGcCGGCAC-AGCGAgCGGAGAGA- -5'
15675 5' -61.6 NC_004065.1 + 30265 0.66 0.764433
Target:  5'- aCCGC-GCCGgugacgGUCGCgcaGCCUCUg- -3'
miRNA:   3'- cGGCGcCGGCa-----CAGCGag-CGGAGAga -5'
15675 5' -61.6 NC_004065.1 + 89176 0.66 0.764433
Target:  5'- uUCGaCGGCCGc-UCGCUCGUCUCcgUCa -3'
miRNA:   3'- cGGC-GCCGGCacAGCGAGCGGAG--AGa -5'
15675 5' -61.6 NC_004065.1 + 132883 0.66 0.764433
Target:  5'- -gCGCGGCCagaggGUCGcCUUGUCgUCUCUg -3'
miRNA:   3'- cgGCGCCGGca---CAGC-GAGCGG-AGAGA- -5'
15675 5' -61.6 NC_004065.1 + 153978 0.66 0.755534
Target:  5'- cGUCGCGGUcguCGUGaUCGUugUCGUCUCUg- -3'
miRNA:   3'- -CGGCGCCG---GCAC-AGCG--AGCGGAGAga -5'
15675 5' -61.6 NC_004065.1 + 89602 0.67 0.746541
Target:  5'- gGCCuGCGGCC-UGUCGU--GCCUCg-- -3'
miRNA:   3'- -CGG-CGCCGGcACAGCGagCGGAGaga -5'
15675 5' -61.6 NC_004065.1 + 1159 0.67 0.73746
Target:  5'- cGCCGCGGUgguccccauUGUGUCGUcggCGCCgCUg- -3'
miRNA:   3'- -CGGCGCCG---------GCACAGCGa--GCGGaGAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.