miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 3' -54.2 NC_004065.1 + 19394 0.66 0.970818
Target:  5'- aUCGUcGuCGUCCUCGGCAUCuUCu- -3'
miRNA:   3'- cGGUAcCuGCAGGAGCCGUAGuAGua -5'
15676 3' -54.2 NC_004065.1 + 24095 0.69 0.897035
Target:  5'- uGCCGaGGACGUCCaUGGCGccgaCGUCGg -3'
miRNA:   3'- -CGGUaCCUGCAGGaGCCGUa---GUAGUa -5'
15676 3' -54.2 NC_004065.1 + 24344 1.08 0.007515
Target:  5'- cGCCAUGGACGUCCUCGGCAUCAUCAUc -3'
miRNA:   3'- -CGGUACCUGCAGGAGCCGUAGUAGUA- -5'
15676 3' -54.2 NC_004065.1 + 26017 0.68 0.949976
Target:  5'- aCCGUGG----CCUCGGCGUCGUCc- -3'
miRNA:   3'- cGGUACCugcaGGAGCCGUAGUAGua -5'
15676 3' -54.2 NC_004065.1 + 31110 0.69 0.903376
Target:  5'- cGCCGucgacaggcUGGuCGUCgUCGGCuUCGUCGa -3'
miRNA:   3'- -CGGU---------ACCuGCAGgAGCCGuAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 31277 0.73 0.735909
Target:  5'- cGCCAcggacggagaggaGGACGUCggCGGCGUCGUCGUu -3'
miRNA:   3'- -CGGUa------------CCUGCAGgaGCCGUAGUAGUA- -5'
15676 3' -54.2 NC_004065.1 + 32283 0.66 0.980675
Target:  5'- cGCUGUccGCGUCCUCGGUcuccUCGUCGg -3'
miRNA:   3'- -CGGUAccUGCAGGAGCCGu---AGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 38437 0.66 0.970818
Target:  5'- cGUCGUGGACGg---CGGCAggaggcUCAUCGg -3'
miRNA:   3'- -CGGUACCUGCaggaGCCGU------AGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 39106 0.68 0.949976
Target:  5'- gGCgAUGGGCGUCCcgCGGCAg------ -3'
miRNA:   3'- -CGgUACCUGCAGGa-GCCGUaguagua -5'
15676 3' -54.2 NC_004065.1 + 51779 0.69 0.903376
Target:  5'- aUCAUcGGACG-CgaCGGCGUCGUCAUg -3'
miRNA:   3'- cGGUA-CCUGCaGgaGCCGUAGUAGUA- -5'
15676 3' -54.2 NC_004065.1 + 57034 0.68 0.941711
Target:  5'- aGCCAUGGcuCGUCgUCGGCAcgacgggcaaggcccCGUCAa -3'
miRNA:   3'- -CGGUACCu-GCAGgAGCCGUa--------------GUAGUa -5'
15676 3' -54.2 NC_004065.1 + 61802 0.68 0.94573
Target:  5'- uGCCGUGGcaguagcagcgcACGgacUCgaCGGCGUCGUCAa -3'
miRNA:   3'- -CGGUACC------------UGC---AGgaGCCGUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 70713 0.67 0.964724
Target:  5'- cGCCGUGaaGGUGUCCUCGGguuugAUCGUCAc -3'
miRNA:   3'- -CGGUAC--CUGCAGGAGCCg----UAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 73168 0.72 0.776666
Target:  5'- cGCCggGGGCG-CCUUcagcgggGGCAUCAUCGc -3'
miRNA:   3'- -CGGuaCCUGCaGGAG-------CCGUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 73268 0.66 0.980675
Target:  5'- ----aGGGCGUCUcgcucguggCGGCAUCGUCGc -3'
miRNA:   3'- cgguaCCUGCAGGa--------GCCGUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 88299 0.72 0.786743
Target:  5'- gGCCGgcguucACGUCCUCGGCcUCGUCGc -3'
miRNA:   3'- -CGGUacc---UGCAGGAGCCGuAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 91450 0.68 0.949976
Target:  5'- gGCC-UGGACGccgaagcggcgCCU-GGCAUCGUCAc -3'
miRNA:   3'- -CGGuACCUGCa----------GGAgCCGUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 111309 0.7 0.862007
Target:  5'- cGCCGgcaaGGAUcUCgUCGGCGUCAUCu- -3'
miRNA:   3'- -CGGUa---CCUGcAGgAGCCGUAGUAGua -5'
15676 3' -54.2 NC_004065.1 + 118583 0.66 0.978485
Target:  5'- cGCCAUGGACGUCggCGGUccCGc--- -3'
miRNA:   3'- -CGGUACCUGCAGgaGCCGuaGUagua -5'
15676 3' -54.2 NC_004065.1 + 125851 0.66 0.978485
Target:  5'- gGUCGUGGGCagcugGUUCUCGGCcgUGUCc- -3'
miRNA:   3'- -CGGUACCUG-----CAGGAGCCGuaGUAGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.