Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 57034 | 0.68 | 0.941711 |
Target: 5'- aGCCAUGGcuCGUCgUCGGCAcgacgggcaaggcccCGUCAa -3' miRNA: 3'- -CGGUACCu-GCAGgAGCCGUa--------------GUAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 146319 | 0.68 | 0.936545 |
Target: 5'- uGCgGUagcGGcacuCGUCCUCGGCAUCcUCGg -3' miRNA: 3'- -CGgUA---CCu---GCAGGAGCCGUAGuAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 153125 | 0.68 | 0.931603 |
Target: 5'- aCCAaGGGCGcCUUCGGCAagacccggcUCGUCAc -3' miRNA: 3'- cGGUaCCUGCaGGAGCCGU---------AGUAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 181516 | 0.68 | 0.931603 |
Target: 5'- gGCCGUGGGCGUugacggaugCCugaUCGGCgAUCAugaUCAUg -3' miRNA: 3'- -CGGUACCUGCA---------GG---AGCCG-UAGU---AGUA- -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 142258 | 0.69 | 0.926426 |
Target: 5'- cGUCGUcGACGaUCCgccgCGGUAUCGUCGUc -3' miRNA: 3'- -CGGUAcCUGC-AGGa---GCCGUAGUAGUA- -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 198371 | 0.69 | 0.919903 |
Target: 5'- cGCCAggaacagcgccGACGUCCcguagccCGGCGUCGUCAg -3' miRNA: 3'- -CGGUac---------CUGCAGGa------GCCGUAGUAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 31110 | 0.69 | 0.903376 |
Target: 5'- cGCCGucgacaggcUGGuCGUCgUCGGCuUCGUCGa -3' miRNA: 3'- -CGGU---------ACCuGCAGgAGCCGuAGUAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 51779 | 0.69 | 0.903376 |
Target: 5'- aUCAUcGGACG-CgaCGGCGUCGUCAUg -3' miRNA: 3'- cGGUA-CCUGCaGgaGCCGUAGUAGUA- -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 24095 | 0.69 | 0.897035 |
Target: 5'- uGCCGaGGACGUCCaUGGCGccgaCGUCGg -3' miRNA: 3'- -CGGUaCCUGCAGGaGCCGUa---GUAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 195641 | 0.7 | 0.869442 |
Target: 5'- cGCCGUGGAaGaCCUCGGC--CGUCAc -3' miRNA: 3'- -CGGUACCUgCaGGAGCCGuaGUAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 111309 | 0.7 | 0.862007 |
Target: 5'- cGCCGgcaaGGAUcUCgUCGGCGUCAUCu- -3' miRNA: 3'- -CGGUa---CCUGcAGgAGCCGUAGUAGua -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 196800 | 0.71 | 0.85437 |
Target: 5'- gGCCGUGGGCG-CCUacgcgccggcaGGCGUCuUCAg -3' miRNA: 3'- -CGGUACCUGCaGGAg----------CCGUAGuAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 200781 | 0.71 | 0.85437 |
Target: 5'- cGCCAUGGACGcCCUgugcgCGGCgAUCcgAUCGg -3' miRNA: 3'- -CGGUACCUGCaGGA-----GCCG-UAG--UAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 88299 | 0.72 | 0.786743 |
Target: 5'- gGCCGgcguucACGUCCUCGGCcUCGUCGc -3' miRNA: 3'- -CGGUacc---UGCAGGAGCCGuAGUAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 148755 | 0.72 | 0.777588 |
Target: 5'- -aCA-GGGCGUCCUCGGCGUCc---- -3' miRNA: 3'- cgGUaCCUGCAGGAGCCGUAGuagua -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 73168 | 0.72 | 0.776666 |
Target: 5'- cGCCggGGGCG-CCUUcagcgggGGCAUCAUCGc -3' miRNA: 3'- -CGGuaCCUGCaGGAG-------CCGUAGUAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 31277 | 0.73 | 0.735909 |
Target: 5'- cGCCAcggacggagaggaGGACGUCggCGGCGUCGUCGUu -3' miRNA: 3'- -CGGUa------------CCUGCAGgaGCCGUAGUAGUA- -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 151790 | 0.76 | 0.589415 |
Target: 5'- cGgCAUGGACGUCCUCuccGCGcUCAUCAg -3' miRNA: 3'- -CgGUACCUGCAGGAGc--CGU-AGUAGUa -5' |
|||||||
15676 | 3' | -54.2 | NC_004065.1 | + | 24344 | 1.08 | 0.007515 |
Target: 5'- cGCCAUGGACGUCCUCGGCAUCAUCAUc -3' miRNA: 3'- -CGGUACCUGCAGGAGCCGUAGUAGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home