Results 61 - 80 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15676 | 5' | -58.1 | NC_004065.1 | + | 166395 | 0.69 | 0.750953 |
Target: 5'- ---cGCUGCCGCCGg-CGCCGacgUCUCu -3' miRNA: 3'- aguaCGACGGCGGCgaGUGGUa--GGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 59962 | 0.69 | 0.76026 |
Target: 5'- cCGUGCgccGCgGCCGCUCGgCGcCCUUc -3' miRNA: 3'- aGUACGa--CGgCGGCGAGUgGUaGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 97010 | 0.69 | 0.750953 |
Target: 5'- gUC-UGCUGCCGCUGCUgcUACUGUCgUg -3' miRNA: 3'- -AGuACGACGGCGGCGA--GUGGUAGgAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 127463 | 0.68 | 0.787505 |
Target: 5'- ---cGCgGCCGCCGCUCccgaACCAcgUCCcCg -3' miRNA: 3'- aguaCGaCGGCGGCGAG----UGGU--AGGaG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 213463 | 0.68 | 0.787505 |
Target: 5'- cCAcgGCcGCCGUCGUUCAUaCAUCUUCg -3' miRNA: 3'- aGUa-CGaCGGCGGCGAGUG-GUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 65653 | 0.68 | 0.76946 |
Target: 5'- ---cGCUGCCGCUGC-CGCCGcaggaagaUCCg- -3' miRNA: 3'- aguaCGACGGCGGCGaGUGGU--------AGGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 85934 | 0.68 | 0.778544 |
Target: 5'- aUUAUcCcGUCGCCGaucucaUCGCCGUCCUCg -3' miRNA: 3'- -AGUAcGaCGGCGGCg-----AGUGGUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 37617 | 0.68 | 0.787505 |
Target: 5'- gUCAUGCUGUacgGCUcacagGC-CACCGUCCUg -3' miRNA: 3'- -AGUACGACGg--CGG-----CGaGUGGUAGGAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 76379 | 0.68 | 0.794579 |
Target: 5'- gCcgGC-GCCGCCGCggaugagcucgcCGCCGUCCg- -3' miRNA: 3'- aGuaCGaCGGCGGCGa-----------GUGGUAGGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 180135 | 0.68 | 0.796334 |
Target: 5'- cUCcUGCUGCUGuuGCUguUCuUCCUCc -3' miRNA: 3'- -AGuACGACGGCggCGAguGGuAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 178900 | 0.68 | 0.796334 |
Target: 5'- --cUGUaGCCacuaucuacCCGCUCAUCAUCCUCa -3' miRNA: 3'- aguACGaCGGc--------GGCGAGUGGUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 173885 | 0.68 | 0.802431 |
Target: 5'- cCGUGUguguggGCCGCCGC-CGCCucaacacucgguagAUCCUa -3' miRNA: 3'- aGUACGa-----CGGCGGCGaGUGG--------------UAGGAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 154172 | 0.68 | 0.805022 |
Target: 5'- gCGgcgGCUGuuGCUgGCUCGCCGUCgccauCUCg -3' miRNA: 3'- aGUa--CGACggCGG-CGAGUGGUAG-----GAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 99176 | 0.68 | 0.805022 |
Target: 5'- ---aGCUGCUGCUGC--ACC-UCCUCg -3' miRNA: 3'- aguaCGACGGCGGCGagUGGuAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 169199 | 0.68 | 0.787505 |
Target: 5'- uUCGUGUcgGCgCGCUGCUCugCGUCg-- -3' miRNA: 3'- -AGUACGa-CG-GCGGCGAGugGUAGgag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 225043 | 0.68 | 0.795457 |
Target: 5'- cCGUGCUGCCGcCCGCUCagguggcGCUGUUg-- -3' miRNA: 3'- aGUACGACGGC-GGCGAG-------UGGUAGgag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 18326 | 0.68 | 0.787505 |
Target: 5'- --cUGCggcgGUCGCUGC-CGCCAUCgUCg -3' miRNA: 3'- aguACGa---CGGCGGCGaGUGGUAGgAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 27628 | 0.68 | 0.76946 |
Target: 5'- --cUGCUGCUGCUGCU-GCCGgcUCUUCu -3' miRNA: 3'- aguACGACGGCGGCGAgUGGU--AGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 146325 | 0.68 | 0.778544 |
Target: 5'- gCGUGUUGCgGuaGCggCACuCGUCCUCg -3' miRNA: 3'- aGUACGACGgCggCGa-GUG-GUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 43871 | 0.68 | 0.787505 |
Target: 5'- uUCGUGuCUggaaccGCCGCCGCUCuCUuUCCUa -3' miRNA: 3'- -AGUAC-GA------CGGCGGCGAGuGGuAGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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