miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 36430 0.71 0.64391
Target:  5'- uUCcUGCUGCCGUCGCU--UCGUCCg- -3'
miRNA:   3'- -AGuACGACGGCGGCGAguGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 76049 0.71 0.64391
Target:  5'- -gGUGCcucGCCGCCGCUC-CC--CCUCg -3'
miRNA:   3'- agUACGa--CGGCGGCGAGuGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 135642 0.7 0.653843
Target:  5'- gUCggGCgcgGCCGgCGCgUCACCGUCCc- -3'
miRNA:   3'- -AGuaCGa--CGGCgGCG-AGUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 48810 0.7 0.66376
Target:  5'- cCAcGCaGCCgGCCGaacggCACCAUCCUCu -3'
miRNA:   3'- aGUaCGaCGG-CGGCga---GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 62875 0.7 0.66376
Target:  5'- -aAUGCUGCUGCCGCggcugCugCcgCCg- -3'
miRNA:   3'- agUACGACGGCGGCGa----GugGuaGGag -5'
15676 5' -58.1 NC_004065.1 + 189690 0.7 0.673652
Target:  5'- aCAUGCcGCUGCCGUUUACCAacugcuaCCUUc -3'
miRNA:   3'- aGUACGaCGGCGGCGAGUGGUa------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 225648 0.7 0.673652
Target:  5'- cUCcgGCUcCCGCCGC-CGCCGUCgcgCUCc -3'
miRNA:   3'- -AGuaCGAcGGCGGCGaGUGGUAG---GAG- -5'
15676 5' -58.1 NC_004065.1 + 27655 0.7 0.683513
Target:  5'- -gGUGCUGCgGCCcgucaucaaGCUaGCCAUCCUg -3'
miRNA:   3'- agUACGACGgCGG---------CGAgUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 100274 0.7 0.683513
Target:  5'- gCGUGCgGUacaGCUGCUCGCCcaCCUCg -3'
miRNA:   3'- aGUACGaCGg--CGGCGAGUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 100002 0.7 0.683513
Target:  5'- uUCGUcGUaGCCGCCGC-CGCCGUacagcaucgCCUCg -3'
miRNA:   3'- -AGUA-CGaCGGCGGCGaGUGGUA---------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 24777 0.7 0.683513
Target:  5'- gUCGUcGCUGCCGCCGC-CAUCuuggggCCg- -3'
miRNA:   3'- -AGUA-CGACGGCGGCGaGUGGua----GGag -5'
15676 5' -58.1 NC_004065.1 + 56204 0.7 0.693334
Target:  5'- cCGUGCUGCaC-CUGCUCACCAagugcggcUUCUCc -3'
miRNA:   3'- aGUACGACG-GcGGCGAGUGGU--------AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 138707 0.7 0.703106
Target:  5'- --uUGUUGuuGCUGCUCGCCcgCCcCg -3'
miRNA:   3'- aguACGACggCGGCGAGUGGuaGGaG- -5'
15676 5' -58.1 NC_004065.1 + 128498 0.69 0.712822
Target:  5'- --cUGCUGCUGCCGCcucCACCGacgacgaugCCUCc -3'
miRNA:   3'- aguACGACGGCGGCGa--GUGGUa--------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 168811 0.69 0.722473
Target:  5'- ---cGCUGUCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 58069 0.69 0.722473
Target:  5'- ---cGCcGCCGCCGCcacCGCCcgCCUUg -3'
miRNA:   3'- aguaCGaCGGCGGCGa--GUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 60068 0.69 0.741547
Target:  5'- gUCAUGCgacgcggGCCG-CGCUCGUCGUCgUCg -3'
miRNA:   3'- -AGUACGa------CGGCgGCGAGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 30219 0.69 0.748141
Target:  5'- ---cGCcGCCGCCGCcagCACCGguccccgaaaagucUCCUCc -3'
miRNA:   3'- aguaCGaCGGCGGCGa--GUGGU--------------AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 53695 0.69 0.750953
Target:  5'- aUCGUGUcGCCGCC-CgacCGCCcUCCUCc -3'
miRNA:   3'- -AGUACGaCGGCGGcGa--GUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 97010 0.69 0.750953
Target:  5'- gUC-UGCUGCCGCUGCUgcUACUGUCgUg -3'
miRNA:   3'- -AGuACGACGGCGGCGA--GUGGUAGgAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.