miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 99176 0.68 0.805022
Target:  5'- ---aGCUGCUGCUGC--ACC-UCCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGagUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 173885 0.68 0.802431
Target:  5'- cCGUGUguguggGCCGCCGC-CGCCucaacacucgguagAUCCUa -3'
miRNA:   3'- aGUACGa-----CGGCGGCGaGUGG--------------UAGGAg -5'
15676 5' -58.1 NC_004065.1 + 68414 0.68 0.796334
Target:  5'- gUCGcGCgcGCCGCCGCgaUCACCgcGUCCa- -3'
miRNA:   3'- -AGUaCGa-CGGCGGCG--AGUGG--UAGGag -5'
15676 5' -58.1 NC_004065.1 + 147666 0.68 0.796334
Target:  5'- gUCGUGCUGCUGgaCGCggUugCGUCCg- -3'
miRNA:   3'- -AGUACGACGGCg-GCGa-GugGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 178900 0.68 0.796334
Target:  5'- --cUGUaGCCacuaucuacCCGCUCAUCAUCCUCa -3'
miRNA:   3'- aguACGaCGGc--------GGCGAGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 180135 0.68 0.796334
Target:  5'- cUCcUGCUGCUGuuGCUguUCuUCCUCc -3'
miRNA:   3'- -AGuACGACGGCggCGAguGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 225043 0.68 0.795457
Target:  5'- cCGUGCUGCCGcCCGCUCagguggcGCUGUUg-- -3'
miRNA:   3'- aGUACGACGGC-GGCGAG-------UGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 76379 0.68 0.794579
Target:  5'- gCcgGC-GCCGCCGCggaugagcucgcCGCCGUCCg- -3'
miRNA:   3'- aGuaCGaCGGCGGCGa-----------GUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 169199 0.68 0.787505
Target:  5'- uUCGUGUcgGCgCGCUGCUCugCGUCg-- -3'
miRNA:   3'- -AGUACGa-CG-GCGGCGAGugGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 213463 0.68 0.787505
Target:  5'- cCAcgGCcGCCGUCGUUCAUaCAUCUUCg -3'
miRNA:   3'- aGUa-CGaCGGCGGCGAGUG-GUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 127463 0.68 0.787505
Target:  5'- ---cGCgGCCGCCGCUCccgaACCAcgUCCcCg -3'
miRNA:   3'- aguaCGaCGGCGGCGAG----UGGU--AGGaG- -5'
15676 5' -58.1 NC_004065.1 + 18326 0.68 0.787505
Target:  5'- --cUGCggcgGUCGCUGC-CGCCAUCgUCg -3'
miRNA:   3'- aguACGa---CGGCGGCGaGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 43871 0.68 0.787505
Target:  5'- uUCGUGuCUggaaccGCCGCCGCUCuCUuUCCUa -3'
miRNA:   3'- -AGUAC-GA------CGGCGGCGAGuGGuAGGAg -5'
15676 5' -58.1 NC_004065.1 + 37617 0.68 0.787505
Target:  5'- gUCAUGCUGUacgGCUcacagGC-CACCGUCCUg -3'
miRNA:   3'- -AGUACGACGg--CGG-----CGaGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 146325 0.68 0.778544
Target:  5'- gCGUGUUGCgGuaGCggCACuCGUCCUCg -3'
miRNA:   3'- aGUACGACGgCggCGa-GUG-GUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 85934 0.68 0.778544
Target:  5'- aUUAUcCcGUCGCCGaucucaUCGCCGUCCUCg -3'
miRNA:   3'- -AGUAcGaCGGCGGCg-----AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 65653 0.68 0.76946
Target:  5'- ---cGCUGCCGCUGC-CGCCGcaggaagaUCCg- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGU--------AGGag -5'
15676 5' -58.1 NC_004065.1 + 27628 0.68 0.76946
Target:  5'- --cUGCUGCUGCUGCU-GCCGgcUCUUCu -3'
miRNA:   3'- aguACGACGGCGGCGAgUGGU--AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 59962 0.69 0.76026
Target:  5'- cCGUGCgccGCgGCCGCUCGgCGcCCUUc -3'
miRNA:   3'- aGUACGa--CGgCGGCGAGUgGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 76775 0.69 0.757478
Target:  5'- gUCcgGCgcaucGCCGCCGCgacggcgaacgcuaUCACCGUUCaUCg -3'
miRNA:   3'- -AGuaCGa----CGGCGGCG--------------AGUGGUAGG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.