miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 65746 0.67 0.813564
Target:  5'- ---cGCUGCUGCCGCUgAgCA-CCUa -3'
miRNA:   3'- aguaCGACGGCGGCGAgUgGUaGGAg -5'
15676 5' -58.1 NC_004065.1 + 67921 0.67 0.821949
Target:  5'- ---cGCcGCCGCCGC-CGCCGcUCCcCg -3'
miRNA:   3'- aguaCGaCGGCGGCGaGUGGU-AGGaG- -5'
15676 5' -58.1 NC_004065.1 + 68351 0.67 0.853792
Target:  5'- ---cGCUGCacCGCCGaCUCGuCCGUCgUCu -3'
miRNA:   3'- aguaCGACG--GCGGC-GAGU-GGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 68414 0.68 0.796334
Target:  5'- gUCGcGCgcGCCGCCGCgaUCACCgcGUCCa- -3'
miRNA:   3'- -AGUaCGa-CGGCGGCG--AGUGG--UAGGag -5'
15676 5' -58.1 NC_004065.1 + 68825 0.66 0.882612
Target:  5'- ---cGCcGCCGCCGCguugcUCGCCAggcccagCUUCg -3'
miRNA:   3'- aguaCGaCGGCGGCG-----AGUGGUa------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 68875 0.66 0.861295
Target:  5'- ---aGCgacGCCaGCUGCUCGCUGUCCa- -3'
miRNA:   3'- aguaCGa--CGG-CGGCGAGUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 70062 0.74 0.449271
Target:  5'- uUCAUGUccGCCGUccucuucuccgccuCGCUCugCAUCCUCu -3'
miRNA:   3'- -AGUACGa-CGGCG--------------GCGAGugGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 70352 0.67 0.8461
Target:  5'- ---cGCUGCCgguGCUGCUCGUCG-CCUCg -3'
miRNA:   3'- aguaCGACGG---CGGCGAGUGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 71717 0.66 0.889303
Target:  5'- gUCGaacgGCUcCUGCCcugGCUUAUCGUCCUCg -3'
miRNA:   3'- -AGUa---CGAcGGCGG---CGAGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 72381 0.72 0.554963
Target:  5'- gCGUGUUcaUCGCCGCgucCACCGUCCUCc -3'
miRNA:   3'- aGUACGAc-GGCGGCGa--GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 73694 0.78 0.269732
Target:  5'- --cUGCUGCCGCCGCUUccuCC-UCCUCc -3'
miRNA:   3'- aguACGACGGCGGCGAGu--GGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 73736 0.8 0.218441
Target:  5'- cCAcUGCUGCCGCCGCUacuCCcgCCUCc -3'
miRNA:   3'- aGU-ACGACGGCGGCGAgu-GGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 75063 0.67 0.838224
Target:  5'- aCGUGCUcgagGCgGCUGCUCauGCCGcUCCUg -3'
miRNA:   3'- aGUACGA----CGgCGGCGAG--UGGU-AGGAg -5'
15676 5' -58.1 NC_004065.1 + 75746 0.66 0.874305
Target:  5'- uUCAcUGCgcccugauccucGCCGCCGC-CAUCGcCCUCg -3'
miRNA:   3'- -AGU-ACGa-----------CGGCGGCGaGUGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 75920 0.67 0.838224
Target:  5'- aUCA-GCccGCgGCCGcCUCGCCGaCCUCc -3'
miRNA:   3'- -AGUaCGa-CGgCGGC-GAGUGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 76049 0.71 0.64391
Target:  5'- -gGUGCcucGCCGCCGCUC-CC--CCUCg -3'
miRNA:   3'- agUACGa--CGGCGGCGAGuGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 76379 0.68 0.794579
Target:  5'- gCcgGC-GCCGCCGCggaugagcucgcCGCCGUCCg- -3'
miRNA:   3'- aGuaCGaCGGCGGCGa-----------GUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 76775 0.69 0.757478
Target:  5'- gUCcgGCgcaucGCCGCCGCgacggcgaacgcuaUCACCGUUCaUCg -3'
miRNA:   3'- -AGuaCGa----CGGCGGCG--------------AGUGGUAGG-AG- -5'
15676 5' -58.1 NC_004065.1 + 79287 0.66 0.889303
Target:  5'- aCA-GCUGCgGCUGgUUagcgGCCAUCUUCa -3'
miRNA:   3'- aGUaCGACGgCGGCgAG----UGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 80270 0.67 0.853792
Target:  5'- aUAUGgaGgaCGUCGCUCACCAccgCCUUg -3'
miRNA:   3'- aGUACgaCg-GCGGCGAGUGGUa--GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.