miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 81161 0.66 0.895781
Target:  5'- ---cGCcccCCGCCGC-CGCC-UCCUCg -3'
miRNA:   3'- aguaCGac-GGCGGCGaGUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 85934 0.68 0.778544
Target:  5'- aUUAUcCcGUCGCCGaucucaUCGCCGUCCUCg -3'
miRNA:   3'- -AGUAcGaCGGCGGCg-----AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 86694 0.67 0.853792
Target:  5'- cUCGccCUGCCGCCGCcccCGCCc-CCUCu -3'
miRNA:   3'- -AGUacGACGGCGGCGa--GUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 88974 0.68 0.805022
Target:  5'- aCGUGCUcauCCGCCGCUCGCg--CCg- -3'
miRNA:   3'- aGUACGAc--GGCGGCGAGUGguaGGag -5'
15676 5' -58.1 NC_004065.1 + 90157 0.71 0.604164
Target:  5'- cCGUcCUGCCGCCgGCUCcGCCG-CCUCc -3'
miRNA:   3'- aGUAcGACGGCGG-CGAG-UGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 90611 0.71 0.603172
Target:  5'- gCGUGCggcgGCCGCUGCUgucacacgugcuaCGCCA-CCUCc -3'
miRNA:   3'- aGUACGa---CGGCGGCGA-------------GUGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 96857 0.76 0.360262
Target:  5'- ---cGCUGUCGCCGCgggCGCCGUUCUg -3'
miRNA:   3'- aguaCGACGGCGGCGa--GUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 96962 0.66 0.861295
Target:  5'- gUC-UGCUGCCGCgccugcugCGCcgGCCGUCCgUCg -3'
miRNA:   3'- -AGuACGACGGCG--------GCGagUGGUAGG-AG- -5'
15676 5' -58.1 NC_004065.1 + 97010 0.69 0.750953
Target:  5'- gUC-UGCUGCCGCUGCUgcUACUGUCgUg -3'
miRNA:   3'- -AGuACGACGGCGGCGA--GUGGUAGgAg -5'
15676 5' -58.1 NC_004065.1 + 97700 0.73 0.525996
Target:  5'- ---cGCUGCCGCCGC-CGCCcgggcuGUCCa- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGG------UAGGag -5'
15676 5' -58.1 NC_004065.1 + 98548 0.67 0.813564
Target:  5'- ---cGCcGcCCGUCGCggCAUCGUCCUCg -3'
miRNA:   3'- aguaCGaC-GGCGGCGa-GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 98660 0.75 0.392073
Target:  5'- cUCAUGCcGCCGCCacuCUCAUCGcccUCCUCg -3'
miRNA:   3'- -AGUACGaCGGCGGc--GAGUGGU---AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 99176 0.68 0.805022
Target:  5'- ---aGCUGCUGCUGC--ACC-UCCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGagUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 100002 0.7 0.683513
Target:  5'- uUCGUcGUaGCCGCCGC-CGCCGUacagcaucgCCUCg -3'
miRNA:   3'- -AGUA-CGaCGGCGGCGaGUGGUA---------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 100274 0.7 0.683513
Target:  5'- gCGUGCgGUacaGCUGCUCGCCcaCCUCg -3'
miRNA:   3'- aGUACGaCGg--CGGCGAGUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 102236 0.66 0.882612
Target:  5'- gUCAUGCaGgCGCuCGacaUCGUCAUCCUCa -3'
miRNA:   3'- -AGUACGaCgGCG-GCg--AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 112045 0.67 0.827722
Target:  5'- gUCAUcGgaGCCGUCgacggacgcguggaGCUCGCCGgcggCCUCg -3'
miRNA:   3'- -AGUA-CgaCGGCGG--------------CGAGUGGUa---GGAG- -5'
15676 5' -58.1 NC_004065.1 + 113714 0.75 0.392073
Target:  5'- ---cGCUGCCGCCGCcgaCGCCGacaCCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGa--GUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 114017 0.72 0.574534
Target:  5'- gUCGU-CUGCCGCCGCg-GCUGUcCCUCg -3'
miRNA:   3'- -AGUAcGACGGCGGCGagUGGUA-GGAG- -5'
15676 5' -58.1 NC_004065.1 + 117403 0.76 0.368043
Target:  5'- ---cGCUGUCgguGCCGUUCACCGUCCUg -3'
miRNA:   3'- aguaCGACGG---CGGCGAGUGGUAGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.