miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 117462 0.71 0.594259
Target:  5'- gUCcgGCUccGCgGCCGCUCGCCG-CCa- -3'
miRNA:   3'- -AGuaCGA--CGgCGGCGAGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 118183 0.66 0.864242
Target:  5'- gUCAcgGCUGCCGCCGUUCgguugGcgcggcugacgcauuCCGUCgUCg -3'
miRNA:   3'- -AGUa-CGACGGCGGCGAG-----U---------------GGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 118237 0.66 0.87571
Target:  5'- uUCAuUGUUaCUGCCGUcuucgucgucaUCAUCAUCCUCg -3'
miRNA:   3'- -AGU-ACGAcGGCGGCG-----------AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 118419 0.66 0.87571
Target:  5'- cCGUGacgGCCGCCGC-CGCgGUCUc- -3'
miRNA:   3'- aGUACga-CGGCGGCGaGUGgUAGGag -5'
15676 5' -58.1 NC_004065.1 + 121148 0.74 0.434317
Target:  5'- -gGUGCUGUCGCCGCgagaCGCCGcCCUg -3'
miRNA:   3'- agUACGACGGCGGCGa---GUGGUaGGAg -5'
15676 5' -58.1 NC_004065.1 + 122498 0.71 0.594259
Target:  5'- gCAgcuggGCgGUCGCCGCgcgCACC-UCCUCg -3'
miRNA:   3'- aGUa----CGaCGGCGGCGa--GUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 127463 0.68 0.787505
Target:  5'- ---cGCgGCCGCCGCUCccgaACCAcgUCCcCg -3'
miRNA:   3'- aguaCGaCGGCGGCGAG----UGGU--AGGaG- -5'
15676 5' -58.1 NC_004065.1 + 127639 0.67 0.8461
Target:  5'- cUCGcGCUGCCGCUGCggCGCCGa---- -3'
miRNA:   3'- -AGUaCGACGGCGGCGa-GUGGUaggag -5'
15676 5' -58.1 NC_004065.1 + 128146 0.72 0.554963
Target:  5'- gUCAUGCUGgCGUuaCGCUCGCCGggCCg- -3'
miRNA:   3'- -AGUACGACgGCG--GCGAGUGGUa-GGag -5'
15676 5' -58.1 NC_004065.1 + 128498 0.69 0.712822
Target:  5'- --cUGCUGCUGCCGCcucCACCGacgacgaugCCUCc -3'
miRNA:   3'- aguACGACGGCGGCGa--GUGGUa--------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 129005 0.67 0.853792
Target:  5'- ---cGCUGCCGCUGCcgCuGCCGacggcugCCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGa-G-UGGUa------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 130325 0.73 0.507003
Target:  5'- gCGgcgGCUGCUGCUGCgaaaCGCCGUCCg- -3'
miRNA:   3'- aGUa--CGACGGCGGCGa---GUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 130726 0.77 0.330295
Target:  5'- cCAUGgUGCCGuCCGg-CGCCAUCCUCc -3'
miRNA:   3'- aGUACgACGGC-GGCgaGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 132216 0.66 0.895781
Target:  5'- aCAUGCUGCUGUCGaucuugCGCCugcacccguUCCUg -3'
miRNA:   3'- aGUACGACGGCGGCga----GUGGu--------AGGAg -5'
15676 5' -58.1 NC_004065.1 + 132374 0.66 0.861295
Target:  5'- aCggGCagGCCGUCGCgUCGCCcUUCUCc -3'
miRNA:   3'- aGuaCGa-CGGCGGCG-AGUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 135100 0.72 0.564727
Target:  5'- gUcgGCUGCUGCa--UCAUCAUCCUCa -3'
miRNA:   3'- aGuaCGACGGCGgcgAGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 135306 0.66 0.889303
Target:  5'- ---cGCgGCUGCCGCguaCGCCugaCCUCu -3'
miRNA:   3'- aguaCGaCGGCGGCGa--GUGGua-GGAG- -5'
15676 5' -58.1 NC_004065.1 + 135642 0.7 0.653843
Target:  5'- gUCggGCgcgGCCGgCGCgUCACCGUCCc- -3'
miRNA:   3'- -AGuaCGa--CGGCgGCG-AGUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 138707 0.7 0.703106
Target:  5'- --uUGUUGuuGCUGCUCGCCcgCCcCg -3'
miRNA:   3'- aguACGACggCGGCGAGUGGuaGGaG- -5'
15676 5' -58.1 NC_004065.1 + 144513 0.66 0.87571
Target:  5'- -gGUGCUGCUaCUGCUCugCGUggcguUCUCg -3'
miRNA:   3'- agUACGACGGcGGCGAGugGUA-----GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.