miRNA display CGI


Results 101 - 120 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 146325 0.68 0.778544
Target:  5'- gCGUGUUGCgGuaGCggCACuCGUCCUCg -3'
miRNA:   3'- aGUACGACGgCggCGa-GUG-GUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 147666 0.68 0.796334
Target:  5'- gUCGUGCUGCUGgaCGCggUugCGUCCg- -3'
miRNA:   3'- -AGUACGACGGCg-GCGa-GugGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 148906 0.72 0.574534
Target:  5'- -uGUGCaUGCUGCUGUUCGCCAUCg-- -3'
miRNA:   3'- agUACG-ACGGCGGCGAGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 149227 0.75 0.417101
Target:  5'- cUCccGCUGCCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- -AGuaCGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 151362 0.73 0.507003
Target:  5'- ---cGCUGCUGCCGUcgUCGCCGagCUCg -3'
miRNA:   3'- aguaCGACGGCGGCG--AGUGGUagGAG- -5'
15676 5' -58.1 NC_004065.1 + 154172 0.68 0.805022
Target:  5'- gCGgcgGCUGuuGCUgGCUCGCCGUCgccauCUCg -3'
miRNA:   3'- aGUa--CGACggCGG-CGAGUGGUAG-----GAG- -5'
15676 5' -58.1 NC_004065.1 + 154401 0.67 0.830172
Target:  5'- ---cGCcGCCGCCGC-CACCGcCCg- -3'
miRNA:   3'- aguaCGaCGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 163583 0.66 0.868603
Target:  5'- gCAaGCUGCCGuCCGC-CACCAgagUCa- -3'
miRNA:   3'- aGUaCGACGGC-GGCGaGUGGUa--GGag -5'
15676 5' -58.1 NC_004065.1 + 163889 0.75 0.400307
Target:  5'- ---cGCUGCCGCCGC-CGCCGcCgCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUaG-GAG- -5'
15676 5' -58.1 NC_004065.1 + 163975 0.67 0.821118
Target:  5'- ---cGCUGuCCGCCGUcagcgauggugcgUUACCAcccUCCUCu -3'
miRNA:   3'- aguaCGAC-GGCGGCG-------------AGUGGU---AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 164700 0.75 0.392073
Target:  5'- --cUGCUGCCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aguACGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 166395 0.69 0.750953
Target:  5'- ---cGCUGCCGCCGg-CGCCGacgUCUCu -3'
miRNA:   3'- aguaCGACGGCGGCgaGUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 166845 0.66 0.889303
Target:  5'- cUCccGUUGuaGCaGCUCGCCAgggCCUCg -3'
miRNA:   3'- -AGuaCGACggCGgCGAGUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 168811 0.69 0.722473
Target:  5'- ---cGCUGUCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 169199 0.68 0.787505
Target:  5'- uUCGUGUcgGCgCGCUGCUCugCGUCg-- -3'
miRNA:   3'- -AGUACGa-CG-GCGGCGAGugGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 170260 0.71 0.614088
Target:  5'- cCGUgGCcGCCGCCGC-CACCAUCg-- -3'
miRNA:   3'- aGUA-CGaCGGCGGCGaGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 170468 0.73 0.516464
Target:  5'- ---cGCUGCCGCCGCagACCGcucggcgagcUCUUCg -3'
miRNA:   3'- aguaCGACGGCGGCGagUGGU----------AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 173885 0.68 0.802431
Target:  5'- cCGUGUguguggGCCGCCGC-CGCCucaacacucgguagAUCCUa -3'
miRNA:   3'- aGUACGa-----CGGCGGCGaGUGG--------------UAGGAg -5'
15676 5' -58.1 NC_004065.1 + 174256 0.71 0.624025
Target:  5'- gUCAUGCUGCCGgagcucCUGUUCGUCAUCgUCg -3'
miRNA:   3'- -AGUACGACGGC------GGCGAGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 176436 0.73 0.516464
Target:  5'- aCA-GCUGCCuccGCCGCcgUCGCCAUCgUCu -3'
miRNA:   3'- aGUaCGACGG---CGGCG--AGUGGUAGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.