miRNA display CGI


Results 121 - 140 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 176881 0.66 0.867881
Target:  5'- aCGUGgaGgCGCCGggCGCCcgcuaucAUCCUCg -3'
miRNA:   3'- aGUACgaCgGCGGCgaGUGG-------UAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 177830 0.67 0.830172
Target:  5'- aUCAUGC-GCgUGCCaGUagaCACCGUCCUCc -3'
miRNA:   3'- -AGUACGaCG-GCGG-CGa--GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 178900 0.68 0.796334
Target:  5'- --cUGUaGCCacuaucuacCCGCUCAUCAUCCUCa -3'
miRNA:   3'- aguACGaCGGc--------GGCGAGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 180135 0.68 0.796334
Target:  5'- cUCcUGCUGCUGuuGCUguUCuUCCUCc -3'
miRNA:   3'- -AGuACGACGGCggCGAguGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 186095 0.67 0.830172
Target:  5'- aCGUGCUGCgGCCGgUCGaaugUCUCa -3'
miRNA:   3'- aGUACGACGgCGGCgAGUgguaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 189690 0.7 0.673652
Target:  5'- aCAUGCcGCUGCCGUUUACCAacugcuaCCUUc -3'
miRNA:   3'- aGUACGaCGGCGGCGAGUGGUa------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 191314 0.66 0.868603
Target:  5'- -gAUGgUGCCgGCCGCgcgugaCACCAUCgcgCUCg -3'
miRNA:   3'- agUACgACGG-CGGCGa-----GUGGUAG---GAG- -5'
15676 5' -58.1 NC_004065.1 + 191564 0.66 0.87571
Target:  5'- gUCAcGC-GCgGCCGg-CACCAUCCUg -3'
miRNA:   3'- -AGUaCGaCGgCGGCgaGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 192378 0.66 0.860553
Target:  5'- ---gGCgGCCGUCGCUuguuucuuccugcCGCgAUCCUCg -3'
miRNA:   3'- aguaCGaCGGCGGCGA-------------GUGgUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 192701 0.66 0.87571
Target:  5'- aUCGUuaUGCUGCCGUgUACCAUCa-- -3'
miRNA:   3'- -AGUAcgACGGCGGCGaGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 194466 0.76 0.360262
Target:  5'- gCAcgGCggcGCCGCCGCUCACgCcUCCUCu -3'
miRNA:   3'- aGUa-CGa--CGGCGGCGAGUG-GuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 195331 0.66 0.861295
Target:  5'- gUC-UGC-GCCGCgCGCUCGCCcgaCCUg -3'
miRNA:   3'- -AGuACGaCGGCG-GCGAGUGGua-GGAg -5'
15676 5' -58.1 NC_004065.1 + 195426 0.73 0.497617
Target:  5'- ---cGCUcCCGCCGCgUCGCCGUCgUCg -3'
miRNA:   3'- aguaCGAcGGCGGCG-AGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 200804 0.66 0.861295
Target:  5'- uUCccGCUGCCGCCcgucgccCUCGCCAUggacgcCCUg -3'
miRNA:   3'- -AGuaCGACGGCGGc------GAGUGGUA------GGAg -5'
15676 5' -58.1 NC_004065.1 + 207969 0.66 0.87571
Target:  5'- -aGUGCUcgggaGCCGCCaGCuUCAUgAUCUUCa -3'
miRNA:   3'- agUACGA-----CGGCGG-CG-AGUGgUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 211099 0.66 0.889303
Target:  5'- --cUGCUGcCCGCCGuCUCGCC-UCg-- -3'
miRNA:   3'- aguACGAC-GGCGGC-GAGUGGuAGgag -5'
15676 5' -58.1 NC_004065.1 + 213463 0.68 0.787505
Target:  5'- cCAcgGCcGCCGUCGUUCAUaCAUCUUCg -3'
miRNA:   3'- aGUa-CGaCGGCGGCGAGUG-GUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 221269 0.74 0.443079
Target:  5'- aUAUGaaccCUGCCGCCGC-CACCAcggCCUCc -3'
miRNA:   3'- aGUAC----GACGGCGGCGaGUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 225043 0.68 0.795457
Target:  5'- cCGUGCUGCCGcCCGCUCagguggcGCUGUUg-- -3'
miRNA:   3'- aGUACGACGGC-GGCGAG-------UGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 225648 0.7 0.673652
Target:  5'- cUCcgGCUcCCGCCGC-CGCCGUCgcgCUCc -3'
miRNA:   3'- -AGuaCGAcGGCGGCGaGUGGUAG---GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.