miRNA display CGI


Results 101 - 120 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 65746 0.67 0.813564
Target:  5'- ---cGCUGCUGCCGCUgAgCA-CCUa -3'
miRNA:   3'- aguaCGACGGCGGCGAgUgGUaGGAg -5'
15676 5' -58.1 NC_004065.1 + 65653 0.68 0.76946
Target:  5'- ---cGCUGCCGCUGC-CGCCGcaggaagaUCCg- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGU--------AGGag -5'
15676 5' -58.1 NC_004065.1 + 62875 0.7 0.66376
Target:  5'- -aAUGCUGCUGCCGCggcugCugCcgCCg- -3'
miRNA:   3'- agUACGACGGCGGCGa----GugGuaGGag -5'
15676 5' -58.1 NC_004065.1 + 62684 0.67 0.8461
Target:  5'- --cUGuCUGCCGCCGCguuggUCGCgGUCUUg -3'
miRNA:   3'- aguAC-GACGGCGGCG-----AGUGgUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 62337 0.75 0.40865
Target:  5'- ---cGCUGCCGCUGCcgUCGCCccugaauccgaAUCCUCa -3'
miRNA:   3'- aguaCGACGGCGGCG--AGUGG-----------UAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 60068 0.69 0.741547
Target:  5'- gUCAUGCgacgcggGCCG-CGCUCGUCGUCgUCg -3'
miRNA:   3'- -AGUACGa------CGGCgGCGAGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 59962 0.69 0.76026
Target:  5'- cCGUGCgccGCgGCCGCUCGgCGcCCUUc -3'
miRNA:   3'- aGUACGa--CGgCGGCGAGUgGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 59826 0.67 0.830172
Target:  5'- cCAUGCgcaGUCGCUGCccgUCGCCAUCg-- -3'
miRNA:   3'- aGUACGa--CGGCGGCG---AGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 58069 0.69 0.722473
Target:  5'- ---cGCcGCCGCCGCcacCGCCcgCCUUg -3'
miRNA:   3'- aguaCGaCGGCGGCGa--GUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 57764 0.67 0.821949
Target:  5'- ---cGUcGUCGCCGC-CGCCGUCgCUCu -3'
miRNA:   3'- aguaCGaCGGCGGCGaGUGGUAG-GAG- -5'
15676 5' -58.1 NC_004065.1 + 56975 0.76 0.37594
Target:  5'- aCAgcUGCUGCCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aGU--ACGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 56888 0.67 0.8461
Target:  5'- -gGUGCcgcgGCCGCUGC-CACCGcaUCCa- -3'
miRNA:   3'- agUACGa---CGGCGGCGaGUGGU--AGGag -5'
15676 5' -58.1 NC_004065.1 + 56204 0.7 0.693334
Target:  5'- cCGUGCUGCaC-CUGCUCACCAagugcggcUUCUCc -3'
miRNA:   3'- aGUACGACG-GcGGCGAGUGGU--------AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 53695 0.69 0.750953
Target:  5'- aUCGUGUcGCCGCC-CgacCGCCcUCCUCc -3'
miRNA:   3'- -AGUACGaCGGCGGcGa--GUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 51155 0.66 0.861295
Target:  5'- cCGUGCcugGUgGCgGUggagUACCGUCCUCg -3'
miRNA:   3'- aGUACGa--CGgCGgCGa---GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 48810 0.7 0.66376
Target:  5'- cCAcGCaGCCgGCCGaacggCACCAUCCUCu -3'
miRNA:   3'- aGUaCGaCGG-CGGCga---GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 48374 0.67 0.842971
Target:  5'- aCGUGCgcgaggucccaccGCCGCCGC-CACCG-CCg- -3'
miRNA:   3'- aGUACGa------------CGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 47590 0.66 0.898312
Target:  5'- cUCAUGUUGgccauccguugccccCCGCCGCggAUCggCCUCa -3'
miRNA:   3'- -AGUACGAC---------------GGCGGCGagUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 47132 0.67 0.8461
Target:  5'- ---aGCUGCCGUCGgUCuCCGagCUCg -3'
miRNA:   3'- aguaCGACGGCGGCgAGuGGUagGAG- -5'
15676 5' -58.1 NC_004065.1 + 45792 0.71 0.633969
Target:  5'- ---gGCUGCCGCCGC-CGCCGcggcgCCg- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUa----GGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.