miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 194466 0.76 0.360262
Target:  5'- gCAcgGCggcGCCGCCGCUCACgCcUCCUCu -3'
miRNA:   3'- aGUa-CGa--CGGCGGCGAGUG-GuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 96857 0.76 0.360262
Target:  5'- ---cGCUGUCGCCGCgggCGCCGUUCUg -3'
miRNA:   3'- aguaCGACGGCGGCGa--GUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 36393 0.77 0.323096
Target:  5'- ---cGCUGCCGCCGCcacuuUCGCUuucAUCCUCu -3'
miRNA:   3'- aguaCGACGGCGGCG-----AGUGG---UAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 73694 0.78 0.269732
Target:  5'- --cUGCUGCCGCCGCUUccuCC-UCCUCc -3'
miRNA:   3'- aguACGACGGCGGCGAGu--GGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 45211 0.78 0.263585
Target:  5'- ---cGCUGCCGCCaccgccaccguuGCgUCACCGUCCUCc -3'
miRNA:   3'- aguaCGACGGCGG------------CG-AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 128146 0.72 0.554963
Target:  5'- gUCAUGCUGgCGUuaCGCUCGCCGggCCg- -3'
miRNA:   3'- -AGUACGACgGCG--GCGAGUGGUa-GGag -5'
15676 5' -58.1 NC_004065.1 + 135100 0.72 0.564727
Target:  5'- gUcgGCUGCUGCa--UCAUCAUCCUCa -3'
miRNA:   3'- aGuaCGACGGCGgcgAGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 60068 0.69 0.741547
Target:  5'- gUCAUGCgacgcggGCCG-CGCUCGUCGUCgUCg -3'
miRNA:   3'- -AGUACGa------CGGCgGCGAGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 58069 0.69 0.722473
Target:  5'- ---cGCcGCCGCCGCcacCGCCcgCCUUg -3'
miRNA:   3'- aguaCGaCGGCGGCGa--GUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 128498 0.69 0.712822
Target:  5'- --cUGCUGCUGCCGCcucCACCGacgacgaugCCUCc -3'
miRNA:   3'- aguACGACGGCGGCGa--GUGGUa--------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 100002 0.7 0.683513
Target:  5'- uUCGUcGUaGCCGCCGC-CGCCGUacagcaucgCCUCg -3'
miRNA:   3'- -AGUA-CGaCGGCGGCGaGUGGUA---------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 27655 0.7 0.683513
Target:  5'- -gGUGCUGCgGCCcgucaucaaGCUaGCCAUCCUg -3'
miRNA:   3'- agUACGACGgCGG---------CGAgUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 100274 0.7 0.683513
Target:  5'- gCGUGCgGUacaGCUGCUCGCCcaCCUCg -3'
miRNA:   3'- aGUACGaCGg--CGGCGAGUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 225648 0.7 0.673652
Target:  5'- cUCcgGCUcCCGCCGC-CGCCGUCgcgCUCc -3'
miRNA:   3'- -AGuaCGAcGGCGGCGaGUGGUAG---GAG- -5'
15676 5' -58.1 NC_004065.1 + 48810 0.7 0.66376
Target:  5'- cCAcGCaGCCgGCCGaacggCACCAUCCUCu -3'
miRNA:   3'- aGUaCGaCGG-CGGCga---GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 170260 0.71 0.614088
Target:  5'- cCGUgGCcGCCGCCGC-CACCAUCg-- -3'
miRNA:   3'- aGUA-CGaCGGCGGCGaGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 90157 0.71 0.604164
Target:  5'- cCGUcCUGCCGCCgGCUCcGCCG-CCUCc -3'
miRNA:   3'- aGUAcGACGGCGG-CGAG-UGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 117462 0.71 0.594259
Target:  5'- gUCcgGCUccGCgGCCGCUCGCCG-CCa- -3'
miRNA:   3'- -AGuaCGA--CGgCGGCGAGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 122498 0.71 0.594259
Target:  5'- gCAgcuggGCgGUCGCCGCgcgCACC-UCCUCg -3'
miRNA:   3'- aGUa----CGaCGGCGGCGa--GUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 21500 0.72 0.58438
Target:  5'- ---cGCUGuuGCCGCaCAUgAUCCUCu -3'
miRNA:   3'- aguaCGACggCGGCGaGUGgUAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.