miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 27655 0.7 0.683513
Target:  5'- -gGUGCUGCgGCCcgucaucaaGCUaGCCAUCCUg -3'
miRNA:   3'- agUACGACGgCGG---------CGAgUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 117462 0.71 0.594259
Target:  5'- gUCcgGCUccGCgGCCGCUCGCCG-CCa- -3'
miRNA:   3'- -AGuaCGA--CGgCGGCGAGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 90157 0.71 0.604164
Target:  5'- cCGUcCUGCCGCCgGCUCcGCCG-CCUCc -3'
miRNA:   3'- aGUAcGACGGCGG-CGAG-UGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 170260 0.71 0.614088
Target:  5'- cCGUgGCcGCCGCCGC-CACCAUCg-- -3'
miRNA:   3'- aGUA-CGaCGGCGGCGaGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 48810 0.7 0.66376
Target:  5'- cCAcGCaGCCgGCCGaacggCACCAUCCUCu -3'
miRNA:   3'- aGUaCGaCGG-CGGCga---GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 225648 0.7 0.673652
Target:  5'- cUCcgGCUcCCGCCGC-CGCCGUCgcgCUCc -3'
miRNA:   3'- -AGuaCGAcGGCGGCGaGUGGUAG---GAG- -5'
15676 5' -58.1 NC_004065.1 + 100274 0.7 0.683513
Target:  5'- gCGUGCgGUacaGCUGCUCGCCcaCCUCg -3'
miRNA:   3'- aGUACGaCGg--CGGCGAGUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 72381 0.72 0.554963
Target:  5'- gCGUGUUcaUCGCCGCgucCACCGUCCUCc -3'
miRNA:   3'- aGUACGAc-GGCGGCGa--GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 176436 0.73 0.516464
Target:  5'- aCA-GCUGCCuccGCCGCcgUCGCCAUCgUCu -3'
miRNA:   3'- aGUaCGACGG---CGGCG--AGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 130325 0.73 0.507003
Target:  5'- gCGgcgGCUGCUGCUGCgaaaCGCCGUCCg- -3'
miRNA:   3'- aGUa--CGACGGCGGCGa---GUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 151362 0.73 0.507003
Target:  5'- ---cGCUGCUGCCGUcgUCGCCGagCUCg -3'
miRNA:   3'- aguaCGACGGCGGCG--AGUGGUagGAG- -5'
15676 5' -58.1 NC_004065.1 + 70062 0.74 0.449271
Target:  5'- uUCAUGUccGCCGUccucuucuccgccuCGCUCugCAUCCUCu -3'
miRNA:   3'- -AGUACGa-CGGCG--------------GCGAGugGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 121148 0.74 0.434317
Target:  5'- -gGUGCUGUCGCCGCgagaCGCCGcCCUg -3'
miRNA:   3'- agUACGACGGCGGCGa---GUGGUaGGAg -5'
15676 5' -58.1 NC_004065.1 + 62337 0.75 0.40865
Target:  5'- ---cGCUGCCGCUGCcgUCGCCccugaauccgaAUCCUCa -3'
miRNA:   3'- aguaCGACGGCGGCG--AGUGG-----------UAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 163889 0.75 0.400307
Target:  5'- ---cGCUGCCGCCGC-CGCCGcCgCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUaG-GAG- -5'
15676 5' -58.1 NC_004065.1 + 98660 0.75 0.392073
Target:  5'- cUCAUGCcGCCGCCacuCUCAUCGcccUCCUCg -3'
miRNA:   3'- -AGUACGaCGGCGGc--GAGUGGU---AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 56975 0.76 0.37594
Target:  5'- aCAgcUGCUGCCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aGU--ACGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 117403 0.76 0.368043
Target:  5'- ---cGCUGUCgguGCCGUUCACCGUCCUg -3'
miRNA:   3'- aguaCGACGG---CGGCGAGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 130726 0.77 0.330295
Target:  5'- cCAUGgUGCCGuCCGg-CGCCAUCCUCc -3'
miRNA:   3'- aGUACgACGGC-GGCgaGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 47590 0.66 0.898312
Target:  5'- cUCAUGUUGgccauccguugccccCCGCCGCggAUCggCCUCa -3'
miRNA:   3'- -AGUACGAC---------------GGCGGCGagUGGuaGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.