miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 27628 0.68 0.76946
Target:  5'- --cUGCUGCUGCUGCU-GCCGgcUCUUCu -3'
miRNA:   3'- aguACGACGGCGGCGAgUGGU--AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 146325 0.68 0.778544
Target:  5'- gCGUGUUGCgGuaGCggCACuCGUCCUCg -3'
miRNA:   3'- aGUACGACGgCggCGa-GUG-GUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 43871 0.68 0.787505
Target:  5'- uUCGUGuCUggaaccGCCGCCGCUCuCUuUCCUa -3'
miRNA:   3'- -AGUAC-GA------CGGCGGCGAGuGGuAGGAg -5'
15676 5' -58.1 NC_004065.1 + 45792 0.71 0.633969
Target:  5'- ---gGCUGCCGCCGC-CGCCGcggcgCCg- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUa----GGag -5'
15676 5' -58.1 NC_004065.1 + 174256 0.71 0.624025
Target:  5'- gUCAUGCUGCCGgagcucCUGUUCGUCAUCgUCg -3'
miRNA:   3'- -AGUACGACGGC------GGCGAGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 130726 0.77 0.330295
Target:  5'- cCAUGgUGCCGuCCGg-CGCCAUCCUCc -3'
miRNA:   3'- aGUACgACGGC-GGCgaGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 117403 0.76 0.368043
Target:  5'- ---cGCUGUCgguGCCGUUCACCGUCCUg -3'
miRNA:   3'- aguaCGACGG---CGGCGAGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 56975 0.76 0.37594
Target:  5'- aCAgcUGCUGCCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aGU--ACGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 98660 0.75 0.392073
Target:  5'- cUCAUGCcGCCGCCacuCUCAUCGcccUCCUCg -3'
miRNA:   3'- -AGUACGaCGGCGGc--GAGUGGU---AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 163889 0.75 0.400307
Target:  5'- ---cGCUGCCGCCGC-CGCCGcCgCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUaG-GAG- -5'
15676 5' -58.1 NC_004065.1 + 62337 0.75 0.40865
Target:  5'- ---cGCUGCCGCUGCcgUCGCCccugaauccgaAUCCUCa -3'
miRNA:   3'- aguaCGACGGCGGCG--AGUGG-----------UAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 121148 0.74 0.434317
Target:  5'- -gGUGCUGUCGCCGCgagaCGCCGcCCUg -3'
miRNA:   3'- agUACGACGGCGGCGa---GUGGUaGGAg -5'
15676 5' -58.1 NC_004065.1 + 70062 0.74 0.449271
Target:  5'- uUCAUGUccGCCGUccucuucuccgccuCGCUCugCAUCCUCu -3'
miRNA:   3'- -AGUACGa-CGGCG--------------GCGAGugGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 151362 0.73 0.507003
Target:  5'- ---cGCUGCUGCCGUcgUCGCCGagCUCg -3'
miRNA:   3'- aguaCGACGGCGGCG--AGUGGUagGAG- -5'
15676 5' -58.1 NC_004065.1 + 130325 0.73 0.507003
Target:  5'- gCGgcgGCUGCUGCUGCgaaaCGCCGUCCg- -3'
miRNA:   3'- aGUa--CGACGGCGGCGa---GUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 176436 0.73 0.516464
Target:  5'- aCA-GCUGCCuccGCCGCcgUCGCCAUCgUCu -3'
miRNA:   3'- aGUaCGACGG---CGGCG--AGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 72381 0.72 0.554963
Target:  5'- gCGUGUUcaUCGCCGCgucCACCGUCCUCc -3'
miRNA:   3'- aGUACGAc-GGCGGCGa--GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 148906 0.72 0.574534
Target:  5'- -uGUGCaUGCUGCUGUUCGCCAUCg-- -3'
miRNA:   3'- agUACG-ACGGCGGCGAGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 114017 0.72 0.574534
Target:  5'- gUCGU-CUGCCGCCGCg-GCUGUcCCUCg -3'
miRNA:   3'- -AGUAcGACGGCGGCGagUGGUA-GGAG- -5'
15676 5' -58.1 NC_004065.1 + 90611 0.71 0.603172
Target:  5'- gCGUGCggcgGCCGCUGCUgucacacgugcuaCGCCA-CCUCc -3'
miRNA:   3'- aGUACGa---CGGCGGCGA-------------GUGGUaGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.