miRNA display CGI


Results 121 - 140 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 130726 0.77 0.330295
Target:  5'- cCAUGgUGCCGuCCGg-CGCCAUCCUCc -3'
miRNA:   3'- aGUACgACGGC-GGCgaGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 45792 0.71 0.633969
Target:  5'- ---gGCUGCCGCCGC-CGCCGcggcgCCg- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUa----GGag -5'
15676 5' -58.1 NC_004065.1 + 27531 0.71 0.633969
Target:  5'- gUCGgcgGC-GCCGCCGgUCucuUCGUCCUCg -3'
miRNA:   3'- -AGUa--CGaCGGCGGCgAGu--GGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 36430 0.71 0.64391
Target:  5'- uUCcUGCUGCCGUCGCU--UCGUCCg- -3'
miRNA:   3'- -AGuACGACGGCGGCGAguGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 213463 0.68 0.787505
Target:  5'- cCAcgGCcGCCGUCGUUCAUaCAUCUUCg -3'
miRNA:   3'- aGUa-CGaCGGCGGCGAGUG-GUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 18326 0.68 0.787505
Target:  5'- --cUGCggcgGUCGCUGC-CGCCAUCgUCg -3'
miRNA:   3'- aguACGa---CGGCGGCGaGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 43871 0.68 0.787505
Target:  5'- uUCGUGuCUggaaccGCCGCCGCUCuCUuUCCUa -3'
miRNA:   3'- -AGUAC-GA------CGGCGGCGAGuGGuAGGAg -5'
15676 5' -58.1 NC_004065.1 + 146325 0.68 0.778544
Target:  5'- gCGUGUUGCgGuaGCggCACuCGUCCUCg -3'
miRNA:   3'- aGUACGACGgCggCGa-GUG-GUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 27628 0.68 0.76946
Target:  5'- --cUGCUGCUGCUGCU-GCCGgcUCUUCu -3'
miRNA:   3'- aguACGACGGCGGCGAgUGGU--AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 59962 0.69 0.76026
Target:  5'- cCGUGCgccGCgGCCGCUCGgCGcCCUUc -3'
miRNA:   3'- aGUACGa--CGgCGGCGAGUgGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 166395 0.69 0.750953
Target:  5'- ---cGCUGCCGCCGg-CGCCGacgUCUCu -3'
miRNA:   3'- aguaCGACGGCGGCgaGUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 30219 0.69 0.748141
Target:  5'- ---cGCcGCCGCCGCcagCACCGguccccgaaaagucUCCUCc -3'
miRNA:   3'- aguaCGaCGGCGGCGa--GUGGU--------------AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 168811 0.69 0.722473
Target:  5'- ---cGCUGUCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 138707 0.7 0.703106
Target:  5'- --uUGUUGuuGCUGCUCGCCcgCCcCg -3'
miRNA:   3'- aguACGACggCGGCGAGUGGuaGGaG- -5'
15676 5' -58.1 NC_004065.1 + 56204 0.7 0.693334
Target:  5'- cCGUGCUGCaC-CUGCUCACCAagugcggcUUCUCc -3'
miRNA:   3'- aGUACGACG-GcGGCGAGUGGU--------AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 24777 0.7 0.683513
Target:  5'- gUCGUcGCUGCCGCCGC-CAUCuuggggCCg- -3'
miRNA:   3'- -AGUA-CGACGGCGGCGaGUGGua----GGag -5'
15676 5' -58.1 NC_004065.1 + 189690 0.7 0.673652
Target:  5'- aCAUGCcGCUGCCGUUUACCAacugcuaCCUUc -3'
miRNA:   3'- aGUACGaCGGCGGCGAGUGGUa------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 62875 0.7 0.66376
Target:  5'- -aAUGCUGCUGCCGCggcugCugCcgCCg- -3'
miRNA:   3'- agUACGACGGCGGCGa----GugGuaGGag -5'
15676 5' -58.1 NC_004065.1 + 135642 0.7 0.653843
Target:  5'- gUCggGCgcgGCCGgCGCgUCACCGUCCc- -3'
miRNA:   3'- -AGuaCGa--CGGCgGCG-AGUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 76049 0.71 0.64391
Target:  5'- -gGUGCcucGCCGCCGCUC-CC--CCUCg -3'
miRNA:   3'- agUACGa--CGGCGGCGAGuGGuaGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.