miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 36430 0.71 0.64391
Target:  5'- uUCcUGCUGCCGUCGCU--UCGUCCg- -3'
miRNA:   3'- -AGuACGACGGCGGCGAguGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 62875 0.7 0.66376
Target:  5'- -aAUGCUGCUGCCGCggcugCugCcgCCg- -3'
miRNA:   3'- agUACGACGGCGGCGa----GugGuaGGag -5'
15676 5' -58.1 NC_004065.1 + 138707 0.7 0.703106
Target:  5'- --uUGUUGuuGCUGCUCGCCcgCCcCg -3'
miRNA:   3'- aguACGACggCGGCGAGUGGuaGGaG- -5'
15676 5' -58.1 NC_004065.1 + 168811 0.69 0.722473
Target:  5'- ---cGCUGUCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 59962 0.69 0.76026
Target:  5'- cCGUGCgccGCgGCCGCUCGgCGcCCUUc -3'
miRNA:   3'- aGUACGa--CGgCGGCGAGUgGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 27628 0.68 0.76946
Target:  5'- --cUGCUGCUGCUGCU-GCCGgcUCUUCu -3'
miRNA:   3'- aguACGACGGCGGCGAgUGGU--AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 43871 0.68 0.787505
Target:  5'- uUCGUGuCUggaaccGCCGCCGCUCuCUuUCCUa -3'
miRNA:   3'- -AGUAC-GA------CGGCGGCGAGuGGuAGGAg -5'
15676 5' -58.1 NC_004065.1 + 135306 0.66 0.889303
Target:  5'- ---cGCgGCUGCCGCguaCGCCugaCCUCu -3'
miRNA:   3'- aguaCGaCGGCGGCGa--GUGGua-GGAG- -5'
15676 5' -58.1 NC_004065.1 + 75746 0.66 0.874305
Target:  5'- uUCAcUGCgcccugauccucGCCGCCGC-CAUCGcCCUCg -3'
miRNA:   3'- -AGU-ACGa-----------CGGCGGCGaGUGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 41725 0.66 0.861295
Target:  5'- cCcgGC-GCaCGCUGCUUACCAUagUCUCg -3'
miRNA:   3'- aGuaCGaCG-GCGGCGAGUGGUA--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 67921 0.67 0.821949
Target:  5'- ---cGCcGCCGCCGC-CGCCGcUCCcCg -3'
miRNA:   3'- aguaCGaCGGCGGCGaGUGGU-AGGaG- -5'
15676 5' -58.1 NC_004065.1 + 59826 0.67 0.830172
Target:  5'- cCAUGCgcaGUCGCUGCccgUCGCCAUCg-- -3'
miRNA:   3'- aGUACGa--CGGCGGCG---AGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 129005 0.67 0.853792
Target:  5'- ---cGCUGCCGCUGCcgCuGCCGacggcugCCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGa-G-UGGUa------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 195331 0.66 0.861295
Target:  5'- gUC-UGC-GCCGCgCGCUCGCCcgaCCUg -3'
miRNA:   3'- -AGuACGaCGGCG-GCGAGUGGua-GGAg -5'
15676 5' -58.1 NC_004065.1 + 53695 0.69 0.750953
Target:  5'- aUCGUGUcGCCGCC-CgacCGCCcUCCUCc -3'
miRNA:   3'- -AGUACGaCGGCGGcGa--GUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 40195 0.66 0.889303
Target:  5'- cUCAgaGCc-CUGCCGUUCACCAUCUUg -3'
miRNA:   3'- -AGUa-CGacGGCGGCGAGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 211099 0.66 0.889303
Target:  5'- --cUGCUGcCCGCCGuCUCGCC-UCg-- -3'
miRNA:   3'- aguACGAC-GGCGGC-GAGUGGuAGgag -5'
15676 5' -58.1 NC_004065.1 + 192701 0.66 0.87571
Target:  5'- aUCGUuaUGCUGCCGUgUACCAUCa-- -3'
miRNA:   3'- -AGUAcgACGGCGGCGaGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 128146 0.72 0.554963
Target:  5'- gUCAUGCUGgCGUuaCGCUCGCCGggCCg- -3'
miRNA:   3'- -AGUACGACgGCG--GCGAGUGGUa-GGag -5'
15676 5' -58.1 NC_004065.1 + 97010 0.69 0.750953
Target:  5'- gUC-UGCUGCCGCUGCUgcUACUGUCgUg -3'
miRNA:   3'- -AGuACGACGGCGGCGA--GUGGUAGgAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.