miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 60068 0.69 0.741547
Target:  5'- gUCAUGCgacgcggGCCG-CGCUCGUCGUCgUCg -3'
miRNA:   3'- -AGUACGa------CGGCgGCGAGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 58069 0.69 0.722473
Target:  5'- ---cGCcGCCGCCGCcacCGCCcgCCUUg -3'
miRNA:   3'- aguaCGaCGGCGGCGa--GUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 128498 0.69 0.712822
Target:  5'- --cUGCUGCUGCCGCcucCACCGacgacgaugCCUCc -3'
miRNA:   3'- aguACGACGGCGGCGa--GUGGUa--------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 100002 0.7 0.683513
Target:  5'- uUCGUcGUaGCCGCCGC-CGCCGUacagcaucgCCUCg -3'
miRNA:   3'- -AGUA-CGaCGGCGGCGaGUGGUA---------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 27655 0.7 0.683513
Target:  5'- -gGUGCUGCgGCCcgucaucaaGCUaGCCAUCCUg -3'
miRNA:   3'- agUACGACGgCGG---------CGAgUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 128146 0.72 0.554963
Target:  5'- gUCAUGCUGgCGUuaCGCUCGCCGggCCg- -3'
miRNA:   3'- -AGUACGACgGCG--GCGAGUGGUa-GGag -5'
15676 5' -58.1 NC_004065.1 + 97700 0.73 0.525996
Target:  5'- ---cGCUGCCGCCGC-CGCCcgggcuGUCCa- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGG------UAGGag -5'
15676 5' -58.1 NC_004065.1 + 127639 0.67 0.8461
Target:  5'- cUCGcGCUGCCGCUGCggCGCCGa---- -3'
miRNA:   3'- -AGUaCGACGGCGGCGa-GUGGUaggag -5'
15676 5' -58.1 NC_004065.1 + 86694 0.67 0.853792
Target:  5'- cUCGccCUGCCGCCGCcccCGCCc-CCUCu -3'
miRNA:   3'- -AGUacGACGGCGGCGa--GUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 40195 0.66 0.889303
Target:  5'- cUCAgaGCc-CUGCCGUUCACCAUCUUg -3'
miRNA:   3'- -AGUa-CGacGGCGGCGAGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 102236 0.66 0.882612
Target:  5'- gUCAUGCaGgCGCuCGacaUCGUCAUCCUCa -3'
miRNA:   3'- -AGUACGaCgGCG-GCg--AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 192701 0.66 0.87571
Target:  5'- aUCGUuaUGCUGCCGUgUACCAUCa-- -3'
miRNA:   3'- -AGUAcgACGGCGGCGaGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 207969 0.66 0.87571
Target:  5'- -aGUGCUcgggaGCCGCCaGCuUCAUgAUCUUCa -3'
miRNA:   3'- agUACGA-----CGGCGG-CG-AGUGgUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 118237 0.66 0.87571
Target:  5'- uUCAuUGUUaCUGCCGUcuucgucgucaUCAUCAUCCUCg -3'
miRNA:   3'- -AGU-ACGAcGGCGGCG-----------AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 191314 0.66 0.868603
Target:  5'- -gAUGgUGCCgGCCGCgcgugaCACCAUCgcgCUCg -3'
miRNA:   3'- agUACgACGG-CGGCGa-----GUGGUAG---GAG- -5'
15676 5' -58.1 NC_004065.1 + 118183 0.66 0.864242
Target:  5'- gUCAcgGCUGCCGCCGUUCgguugGcgcggcugacgcauuCCGUCgUCg -3'
miRNA:   3'- -AGUa-CGACGGCGGCGAG-----U---------------GGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 24590 0.66 0.861295
Target:  5'- gCGUGUcGUCGCCGC-CACCG-CCg- -3'
miRNA:   3'- aGUACGaCGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 132374 0.66 0.861295
Target:  5'- aCggGCagGCCGUCGCgUCGCCcUUCUCc -3'
miRNA:   3'- aGuaCGa-CGGCGGCG-AGUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 96962 0.66 0.861295
Target:  5'- gUC-UGCUGCCGCgccugcugCGCcgGCCGUCCgUCg -3'
miRNA:   3'- -AGuACGACGGCG--------GCGagUGGUAGG-AG- -5'
15676 5' -58.1 NC_004065.1 + 80270 0.67 0.853792
Target:  5'- aUAUGgaGgaCGUCGCUCACCAccgCCUUg -3'
miRNA:   3'- aGUACgaCg-GCGGCGAGUGGUa--GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.