miRNA display CGI


Results 101 - 120 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 24590 0.66 0.861295
Target:  5'- gCGUGUcGUCGCCGC-CACCG-CCg- -3'
miRNA:   3'- aGUACGaCGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 118183 0.66 0.864242
Target:  5'- gUCAcgGCUGCCGCCGUUCgguugGcgcggcugacgcauuCCGUCgUCg -3'
miRNA:   3'- -AGUa-CGACGGCGGCGAG-----U---------------GGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 211099 0.66 0.889303
Target:  5'- --cUGCUGcCCGCCGuCUCGCC-UCg-- -3'
miRNA:   3'- aguACGAC-GGCGGC-GAGUGGuAGgag -5'
15676 5' -58.1 NC_004065.1 + 40195 0.66 0.889303
Target:  5'- cUCAgaGCc-CUGCCGUUCACCAUCUUg -3'
miRNA:   3'- -AGUa-CGacGGCGGCGAGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 191314 0.66 0.868603
Target:  5'- -gAUGgUGCCgGCCGCgcgugaCACCAUCgcgCUCg -3'
miRNA:   3'- agUACgACGG-CGGCGa-----GUGGUAG---GAG- -5'
15676 5' -58.1 NC_004065.1 + 192701 0.66 0.87571
Target:  5'- aUCGUuaUGCUGCCGUgUACCAUCa-- -3'
miRNA:   3'- -AGUAcgACGGCGGCGaGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 62684 0.67 0.8461
Target:  5'- --cUGuCUGCCGCCGCguuggUCGCgGUCUUg -3'
miRNA:   3'- aguAC-GACGGCGGCG-----AGUGgUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 75063 0.67 0.838224
Target:  5'- aCGUGCUcgagGCgGCUGCUCauGCCGcUCCUg -3'
miRNA:   3'- aGUACGA----CGgCGGCGAG--UGGU-AGGAg -5'
15676 5' -58.1 NC_004065.1 + 118237 0.66 0.87571
Target:  5'- uUCAuUGUUaCUGCCGUcuucgucgucaUCAUCAUCCUCg -3'
miRNA:   3'- -AGU-ACGAcGGCGGCG-----------AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 60068 0.69 0.741547
Target:  5'- gUCAUGCgacgcggGCCG-CGCUCGUCGUCgUCg -3'
miRNA:   3'- -AGUACGa------CGGCgGCGAGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 97010 0.69 0.750953
Target:  5'- gUC-UGCUGCCGCUGCUgcUACUGUCgUg -3'
miRNA:   3'- -AGuACGACGGCGGCGA--GUGGUAGgAg -5'
15676 5' -58.1 NC_004065.1 + 53695 0.69 0.750953
Target:  5'- aUCGUGUcGCCGCC-CgacCGCCcUCCUCc -3'
miRNA:   3'- -AGUACGaCGGCGGcGa--GUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 173885 0.68 0.802431
Target:  5'- cCGUGUguguggGCCGCCGC-CGCCucaacacucgguagAUCCUa -3'
miRNA:   3'- aGUACGa-----CGGCGGCGaGUGG--------------UAGGAg -5'
15676 5' -58.1 NC_004065.1 + 99176 0.68 0.805022
Target:  5'- ---aGCUGCUGCUGC--ACC-UCCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGagUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 154172 0.68 0.805022
Target:  5'- gCGgcgGCUGuuGCUgGCUCGCCGUCgccauCUCg -3'
miRNA:   3'- aGUa--CGACggCGG-CGAGUGGUAG-----GAG- -5'
15676 5' -58.1 NC_004065.1 + 65746 0.67 0.813564
Target:  5'- ---cGCUGCUGCCGCUgAgCA-CCUa -3'
miRNA:   3'- aguaCGACGGCGGCGAgUgGUaGGAg -5'
15676 5' -58.1 NC_004065.1 + 98548 0.67 0.813564
Target:  5'- ---cGCcGcCCGUCGCggCAUCGUCCUCg -3'
miRNA:   3'- aguaCGaC-GGCGGCGa-GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 163975 0.67 0.821118
Target:  5'- ---cGCUGuCCGCCGUcagcgauggugcgUUACCAcccUCCUCu -3'
miRNA:   3'- aguaCGAC-GGCGGCG-------------AGUGGU---AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 186095 0.67 0.830172
Target:  5'- aCGUGCUGCgGCCGgUCGaaugUCUCa -3'
miRNA:   3'- aGUACGACGgCGGCgAGUgguaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 57764 0.67 0.821949
Target:  5'- ---cGUcGUCGCCGC-CGCCGUCgCUCu -3'
miRNA:   3'- aguaCGaCGGCGGCGaGUGGUAG-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.