Results 121 - 140 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15676 | 5' | -58.1 | NC_004065.1 | + | 6131 | 0.66 | 0.889303 |
Target: 5'- ------cGCCGCCGC-CGCCAgcUCCUa -3' miRNA: 3'- aguacgaCGGCGGCGaGUGGU--AGGAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 166845 | 0.66 | 0.889303 |
Target: 5'- cUCccGUUGuaGCaGCUCGCCAgggCCUCg -3' miRNA: 3'- -AGuaCGACggCGgCGAGUGGUa--GGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 34198 | 0.66 | 0.895781 |
Target: 5'- aCggGCUcGagCGCCGuCUCACCGUCC-Ca -3' miRNA: 3'- aGuaCGA-Cg-GCGGC-GAGUGGUAGGaG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 86694 | 0.67 | 0.853792 |
Target: 5'- cUCGccCUGCCGCCGCcccCGCCc-CCUCu -3' miRNA: 3'- -AGUacGACGGCGGCGa--GUGGuaGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 127639 | 0.67 | 0.8461 |
Target: 5'- cUCGcGCUGCCGCUGCggCGCCGa---- -3' miRNA: 3'- -AGUaCGACGGCGGCGa-GUGGUaggag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 37617 | 0.68 | 0.787505 |
Target: 5'- gUCAUGCUGUacgGCUcacagGC-CACCGUCCUg -3' miRNA: 3'- -AGUACGACGg--CGG-----CGaGUGGUAGGAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 76379 | 0.68 | 0.794579 |
Target: 5'- gCcgGC-GCCGCCGCggaugagcucgcCGCCGUCCg- -3' miRNA: 3'- aGuaCGaCGGCGGCGa-----------GUGGUAGGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 180135 | 0.68 | 0.796334 |
Target: 5'- cUCcUGCUGCUGuuGCUguUCuUCCUCc -3' miRNA: 3'- -AGuACGACGGCggCGAguGGuAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 178900 | 0.68 | 0.796334 |
Target: 5'- --cUGUaGCCacuaucuacCCGCUCAUCAUCCUCa -3' miRNA: 3'- aguACGaCGGc--------GGCGAGUGGUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 173885 | 0.68 | 0.802431 |
Target: 5'- cCGUGUguguggGCCGCCGC-CGCCucaacacucgguagAUCCUa -3' miRNA: 3'- aGUACGa-----CGGCGGCGaGUGG--------------UAGGAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 99176 | 0.68 | 0.805022 |
Target: 5'- ---aGCUGCUGCUGC--ACC-UCCUCg -3' miRNA: 3'- aguaCGACGGCGGCGagUGGuAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 154172 | 0.68 | 0.805022 |
Target: 5'- gCGgcgGCUGuuGCUgGCUCGCCGUCgccauCUCg -3' miRNA: 3'- aGUa--CGACggCGG-CGAGUGGUAG-----GAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 65746 | 0.67 | 0.813564 |
Target: 5'- ---cGCUGCUGCCGCUgAgCA-CCUa -3' miRNA: 3'- aguaCGACGGCGGCGAgUgGUaGGAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 98548 | 0.67 | 0.813564 |
Target: 5'- ---cGCcGcCCGUCGCggCAUCGUCCUCg -3' miRNA: 3'- aguaCGaC-GGCGGCGa-GUGGUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 163975 | 0.67 | 0.821118 |
Target: 5'- ---cGCUGuCCGCCGUcagcgauggugcgUUACCAcccUCCUCu -3' miRNA: 3'- aguaCGAC-GGCGGCG-------------AGUGGU---AGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 57764 | 0.67 | 0.821949 |
Target: 5'- ---cGUcGUCGCCGC-CGCCGUCgCUCu -3' miRNA: 3'- aguaCGaCGGCGGCGaGUGGUAG-GAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 186095 | 0.67 | 0.830172 |
Target: 5'- aCGUGCUGCgGCCGgUCGaaugUCUCa -3' miRNA: 3'- aGUACGACGgCGGCgAGUgguaGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 75063 | 0.67 | 0.838224 |
Target: 5'- aCGUGCUcgagGCgGCUGCUCauGCCGcUCCUg -3' miRNA: 3'- aGUACGA----CGgCGGCGAG--UGGU-AGGAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 62684 | 0.67 | 0.8461 |
Target: 5'- --cUGuCUGCCGCCGCguuggUCGCgGUCUUg -3' miRNA: 3'- aguAC-GACGGCGGCG-----AGUGgUAGGAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 47132 | 0.67 | 0.8461 |
Target: 5'- ---aGCUGCCGUCGgUCuCCGagCUCg -3' miRNA: 3'- aguaCGACGGCGGCgAGuGGUagGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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