miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 75746 0.66 0.874305
Target:  5'- uUCAcUGCgcccugauccucGCCGCCGC-CAUCGcCCUCg -3'
miRNA:   3'- -AGU-ACGa-----------CGGCGGCGaGUGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 191314 0.66 0.868603
Target:  5'- -gAUGgUGCCgGCCGCgcgugaCACCAUCgcgCUCg -3'
miRNA:   3'- agUACgACGG-CGGCGa-----GUGGUAG---GAG- -5'
15676 5' -58.1 NC_004065.1 + 163583 0.66 0.868603
Target:  5'- gCAaGCUGCCGuCCGC-CACCAgagUCa- -3'
miRNA:   3'- aGUaCGACGGC-GGCGaGUGGUa--GGag -5'
15676 5' -58.1 NC_004065.1 + 176881 0.66 0.867881
Target:  5'- aCGUGgaGgCGCCGggCGCCcgcuaucAUCCUCg -3'
miRNA:   3'- aGUACgaCgGCGGCgaGUGG-------UAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 118183 0.66 0.864242
Target:  5'- gUCAcgGCUGCCGCCGUUCgguugGcgcggcugacgcauuCCGUCgUCg -3'
miRNA:   3'- -AGUa-CGACGGCGGCGAG-----U---------------GGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 51155 0.66 0.861295
Target:  5'- cCGUGCcugGUgGCgGUggagUACCGUCCUCg -3'
miRNA:   3'- aGUACGa--CGgCGgCGa---GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 200804 0.66 0.861295
Target:  5'- uUCccGCUGCCGCCcgucgccCUCGCCAUggacgcCCUg -3'
miRNA:   3'- -AGuaCGACGGCGGc------GAGUGGUA------GGAg -5'
15676 5' -58.1 NC_004065.1 + 195331 0.66 0.861295
Target:  5'- gUC-UGC-GCCGCgCGCUCGCCcgaCCUg -3'
miRNA:   3'- -AGuACGaCGGCG-GCGAGUGGua-GGAg -5'
15676 5' -58.1 NC_004065.1 + 41725 0.66 0.861295
Target:  5'- cCcgGC-GCaCGCUGCUUACCAUagUCUCg -3'
miRNA:   3'- aGuaCGaCG-GCGGCGAGUGGUA--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 132374 0.66 0.861295
Target:  5'- aCggGCagGCCGUCGCgUCGCCcUUCUCc -3'
miRNA:   3'- aGuaCGa-CGGCGGCG-AGUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 68875 0.66 0.861295
Target:  5'- ---aGCgacGCCaGCUGCUCGCUGUCCa- -3'
miRNA:   3'- aguaCGa--CGG-CGGCGAGUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 96962 0.66 0.861295
Target:  5'- gUC-UGCUGCCGCgccugcugCGCcgGCCGUCCgUCg -3'
miRNA:   3'- -AGuACGACGGCG--------GCGagUGGUAGG-AG- -5'
15676 5' -58.1 NC_004065.1 + 24590 0.66 0.861295
Target:  5'- gCGUGUcGUCGCCGC-CACCG-CCg- -3'
miRNA:   3'- aGUACGaCGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 192378 0.66 0.860553
Target:  5'- ---gGCgGCCGUCGCUuguuucuuccugcCGCgAUCCUCg -3'
miRNA:   3'- aguaCGaCGGCGGCGA-------------GUGgUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 129005 0.67 0.853792
Target:  5'- ---cGCUGCCGCUGCcgCuGCCGacggcugCCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGa-G-UGGUa------GGAG- -5'
15676 5' -58.1 NC_004065.1 + 86694 0.67 0.853792
Target:  5'- cUCGccCUGCCGCCGCcccCGCCc-CCUCu -3'
miRNA:   3'- -AGUacGACGGCGGCGa--GUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 68351 0.67 0.853792
Target:  5'- ---cGCUGCacCGCCGaCUCGuCCGUCgUCu -3'
miRNA:   3'- aguaCGACG--GCGGC-GAGU-GGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 80270 0.67 0.853792
Target:  5'- aUAUGgaGgaCGUCGCUCACCAccgCCUUg -3'
miRNA:   3'- aGUACgaCg-GCGGCGAGUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 56888 0.67 0.8461
Target:  5'- -gGUGCcgcgGCCGCUGC-CACCGcaUCCa- -3'
miRNA:   3'- agUACGa---CGGCGGCGaGUGGU--AGGag -5'
15676 5' -58.1 NC_004065.1 + 62684 0.67 0.8461
Target:  5'- --cUGuCUGCCGCCGCguuggUCGCgGUCUUg -3'
miRNA:   3'- aguAC-GACGGCGGCG-----AGUGgUAGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.