miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 3' -57.1 NC_004065.1 + 91996 0.74 0.543291
Target:  5'- aACCGCCCcGAAGGGCUC-CGUgcgCcGCa -3'
miRNA:   3'- -UGGUGGGcUUUCCCGAGaGCGa--GaCG- -5'
15677 3' -57.1 NC_004065.1 + 121257 0.66 0.93332
Target:  5'- cGCCACCUcu-AGGuccagcguGCUCUUGCUCguccGCa -3'
miRNA:   3'- -UGGUGGGcuuUCC--------CGAGAGCGAGa---CG- -5'
15677 3' -57.1 NC_004065.1 + 127702 0.66 0.928341
Target:  5'- cACCACgcacguguuUCGggGGcuGCUCUCGCUCUcCg -3'
miRNA:   3'- -UGGUG---------GGCuuUCc-CGAGAGCGAGAcG- -5'
15677 3' -57.1 NC_004065.1 + 193760 0.66 0.927831
Target:  5'- uGCCGaCCGAGAGaugauggcgacuuGaGCUCgCGCUCUGUg -3'
miRNA:   3'- -UGGUgGGCUUUC-------------C-CGAGaGCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 120873 0.67 0.906186
Target:  5'- cACCggcuuGCCCGGGgucAGGGCggcgUCUCGCg--GCg -3'
miRNA:   3'- -UGG-----UGGGCUU---UCCCG----AGAGCGagaCG- -5'
15677 3' -57.1 NC_004065.1 + 19180 0.67 0.900092
Target:  5'- uUCugCCGAGGcGGGacacCUCcggcCGCUCUGCg -3'
miRNA:   3'- uGGugGGCUUU-CCC----GAGa---GCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 58231 0.67 0.89378
Target:  5'- cGCCGCgCaCG-AAGGGCUCcUCGCUgaGg -3'
miRNA:   3'- -UGGUG-G-GCuUUCCCGAG-AGCGAgaCg -5'
15677 3' -57.1 NC_004065.1 + 115206 0.67 0.887254
Target:  5'- gGCCGCCgCGAcGGGGCauacCGCcgggCUGCu -3'
miRNA:   3'- -UGGUGG-GCUuUCCCGaga-GCGa---GACG- -5'
15677 3' -57.1 NC_004065.1 + 113785 0.67 0.88659
Target:  5'- gACCgACUCGGGc-GGCUUcuucagacacguuUCGCUCUGCg -3'
miRNA:   3'- -UGG-UGGGCUUucCCGAG-------------AGCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 129966 0.67 0.880516
Target:  5'- cGCuCACgCGAgcGAGGG-UCagGCUCUGCg -3'
miRNA:   3'- -UG-GUGgGCU--UUCCCgAGagCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 130316 0.67 0.873571
Target:  5'- aACCGCCUucGucagcucccGGGaGCUCUCGCUCUu- -3'
miRNA:   3'- -UGGUGGGcuU---------UCC-CGAGAGCGAGAcg -5'
15677 3' -57.1 NC_004065.1 + 110205 0.73 0.562691
Target:  5'- cGCCGCCCGucgagagggaAGAGGGCU-UCGCcggcggCUGCg -3'
miRNA:   3'- -UGGUGGGC----------UUUCCCGAgAGCGa-----GACG- -5'
15677 3' -57.1 NC_004065.1 + 56113 0.72 0.651526
Target:  5'- gACCGuCCCGGAcgacGGcGGCgCUCGCcuUCUGCa -3'
miRNA:   3'- -UGGU-GGGCUU----UC-CCGaGAGCG--AGACG- -5'
15677 3' -57.1 NC_004065.1 + 163096 0.71 0.681131
Target:  5'- gGCCGCaCCGAGaacugGGGGCccggCUgGCUgUGCg -3'
miRNA:   3'- -UGGUG-GGCUU-----UCCCGa---GAgCGAgACG- -5'
15677 3' -57.1 NC_004065.1 + 120173 0.69 0.819582
Target:  5'- uGCCACCUggguGAGGGGaGCgacgccgcgCUCGCcCUGCc -3'
miRNA:   3'- -UGGUGGG----CUUUCC-CGa--------GAGCGaGACG- -5'
15677 3' -57.1 NC_004065.1 + 162536 0.69 0.827828
Target:  5'- gGCCAgguCUCGGAcGGGCUCUCGagacucgauCUCgUGCa -3'
miRNA:   3'- -UGGU---GGGCUUuCCCGAGAGC---------GAG-ACG- -5'
15677 3' -57.1 NC_004065.1 + 94061 0.68 0.851538
Target:  5'- cCCGCUCGAcgcuccGCUUUUGCUCUGCc -3'
miRNA:   3'- uGGUGGGCUuucc--CGAGAGCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 17222 0.68 0.851538
Target:  5'- cGCCAaagcgUCCGAAAGGGC-CUCag-CUGCc -3'
miRNA:   3'- -UGGU-----GGGCUUUCCCGaGAGcgaGACG- -5'
15677 3' -57.1 NC_004065.1 + 162522 0.66 0.938075
Target:  5'- aACCGCCCGAAAuguGGGuCUUcCGcCUCguuacGCa -3'
miRNA:   3'- -UGGUGGGCUUU---CCC-GAGaGC-GAGa----CG- -5'
15677 3' -57.1 NC_004065.1 + 82755 0.78 0.322176
Target:  5'- gGCCACCgaUGAGGGGG-UCUCGgUCUGCg -3'
miRNA:   3'- -UGGUGG--GCUUUCCCgAGAGCgAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.