miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 3' -57.1 NC_004065.1 + 130316 0.67 0.873571
Target:  5'- aACCGCCUucGucagcucccGGGaGCUCUCGCUCUu- -3'
miRNA:   3'- -UGGUGGGcuU---------UCC-CGAGAGCGAGAcg -5'
15677 3' -57.1 NC_004065.1 + 74408 0.67 0.873571
Target:  5'- cGCCGCCUGc-GGGGUUCUCgGCcCggGCa -3'
miRNA:   3'- -UGGUGGGCuuUCCCGAGAG-CGaGa-CG- -5'
15677 3' -57.1 NC_004065.1 + 184400 0.68 0.866422
Target:  5'- aACCuuACCCGGccugGGGGGCUC-CGUUCaccGCu -3'
miRNA:   3'- -UGG--UGGGCU----UUCCCGAGaGCGAGa--CG- -5'
15677 3' -57.1 NC_004065.1 + 57496 0.68 0.859077
Target:  5'- gACCGgcgucUUCGAGGGGGUUUUCGCUgUGa -3'
miRNA:   3'- -UGGU-----GGGCUUUCCCGAGAGCGAgACg -5'
15677 3' -57.1 NC_004065.1 + 17222 0.68 0.851538
Target:  5'- cGCCAaagcgUCCGAAAGGGC-CUCag-CUGCc -3'
miRNA:   3'- -UGGU-----GGGCUUUCCCGaGAGcgaGACG- -5'
15677 3' -57.1 NC_004065.1 + 94061 0.68 0.851538
Target:  5'- cCCGCUCGAcgcuccGCUUUUGCUCUGCc -3'
miRNA:   3'- uGGUGGGCUuucc--CGAGAGCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 200146 0.68 0.843813
Target:  5'- cACC-CCCgGGGAGGGCgaccggC-CGCUCgUGCu -3'
miRNA:   3'- -UGGuGGG-CUUUCCCGa-----GaGCGAG-ACG- -5'
15677 3' -57.1 NC_004065.1 + 188711 0.68 0.843813
Target:  5'- ---uUCCGAGAaGGGCUCUCuCUCUGa -3'
miRNA:   3'- ugguGGGCUUU-CCCGAGAGcGAGACg -5'
15677 3' -57.1 NC_004065.1 + 162536 0.69 0.827828
Target:  5'- gGCCAgguCUCGGAcGGGCUCUCGagacucgauCUCgUGCa -3'
miRNA:   3'- -UGGU---GGGCUUuCCCGAGAGC---------GAG-ACG- -5'
15677 3' -57.1 NC_004065.1 + 120173 0.69 0.819582
Target:  5'- uGCCACCUggguGAGGGGaGCgacgccgcgCUCGCcCUGCc -3'
miRNA:   3'- -UGGUGGG----CUUUCC-CGa--------GAGCGaGACG- -5'
15677 3' -57.1 NC_004065.1 + 201444 0.69 0.810326
Target:  5'- cGCCGCCCGAGccGGGacgcgccGCUUggugucggCGCUgCUGCg -3'
miRNA:   3'- -UGGUGGGCUU--UCC-------CGAGa-------GCGA-GACG- -5'
15677 3' -57.1 NC_004065.1 + 151985 0.69 0.793912
Target:  5'- aGCgGCUCucGAGGGC-CUCGgaCUGCg -3'
miRNA:   3'- -UGgUGGGcuUUCCCGaGAGCgaGACG- -5'
15677 3' -57.1 NC_004065.1 + 53060 0.7 0.757808
Target:  5'- uUUugCCGAGGgcGGGCg--CGCUCUGCu -3'
miRNA:   3'- uGGugGGCUUU--CCCGagaGCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 125958 0.71 0.720036
Target:  5'- cCCGCCCcAGGGGGaugaUCgggucagggCGCUCUGCc -3'
miRNA:   3'- uGGUGGGcUUUCCCg---AGa--------GCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 87642 0.71 0.682113
Target:  5'- gGCCGCUCGAucaaccggcggaugcAGGGC-CU-GCUCUGCg -3'
miRNA:   3'- -UGGUGGGCUu--------------UCCCGaGAgCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 163096 0.71 0.681131
Target:  5'- gGCCGCaCCGAGaacugGGGGCccggCUgGCUgUGCg -3'
miRNA:   3'- -UGGUG-GGCUU-----UCCCGa---GAgCGAgACG- -5'
15677 3' -57.1 NC_004065.1 + 56113 0.72 0.651526
Target:  5'- gACCGuCCCGGAcgacGGcGGCgCUCGCcuUCUGCa -3'
miRNA:   3'- -UGGU-GGGCUU----UC-CCGaGAGCG--AGACG- -5'
15677 3' -57.1 NC_004065.1 + 110205 0.73 0.562691
Target:  5'- cGCCGCCCGucgagagggaAGAGGGCU-UCGCcggcggCUGCg -3'
miRNA:   3'- -UGGUGGGC----------UUUCCCGAgAGCGa-----GACG- -5'
15677 3' -57.1 NC_004065.1 + 91996 0.74 0.543291
Target:  5'- aACCGCCCcGAAGGGCUC-CGUgcgCcGCa -3'
miRNA:   3'- -UGGUGGGcUUUCCCGAGaGCGa--GaCG- -5'
15677 3' -57.1 NC_004065.1 + 195062 0.74 0.514624
Target:  5'- cACCGCCaCGGcguucAGGGGCUCgacgaUCGCcCUGCg -3'
miRNA:   3'- -UGGUGG-GCU-----UUCCCGAG-----AGCGaGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.