miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 188897 0.67 0.762078
Target:  5'- cCGCUGGuCGUGGugugguacGUGCUCGCcGCCGGc -3'
miRNA:   3'- cGCGACC-GCGCUc-------UAUGGGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 125698 0.67 0.770878
Target:  5'- cGCGCaucaUGGUGgguaaccugccCGAGGcGCUgGCGCCGGc -3'
miRNA:   3'- -CGCG----ACCGC-----------GCUCUaUGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 113846 0.67 0.770878
Target:  5'- cCGCgGGCGaCGAGuuuggauuUGCCCGCgGCCu- -3'
miRNA:   3'- cGCGaCCGC-GCUCu-------AUGGGCG-CGGcc -5'
15677 5' -60.8 NC_004065.1 + 124711 0.67 0.779571
Target:  5'- -aGCaGGUGCuucAGGUucagGCCCGCGCCGc -3'
miRNA:   3'- cgCGaCCGCGc--UCUA----UGGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 177038 0.67 0.774369
Target:  5'- cGCGcCUcgccucaaaccuuggGGCGCGAGGagucuCCCGCGUCa- -3'
miRNA:   3'- -CGC-GA---------------CCGCGCUCUau---GGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 225393 0.67 0.78815
Target:  5'- gGCGCUGGCGCuGAuGGUG-CCGCuCCc- -3'
miRNA:   3'- -CGCGACCGCG-CU-CUAUgGGCGcGGcc -5'
15677 5' -60.8 NC_004065.1 + 136511 0.67 0.779571
Target:  5'- aUGgaGGCgGCGAGAcaucuCCCGuCGUCGGu -3'
miRNA:   3'- cGCgaCCG-CGCUCUau---GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 66395 0.67 0.779571
Target:  5'- -aGCUGGCGCcGGuccgcgGCCCagcGCGCCa- -3'
miRNA:   3'- cgCGACCGCGcUCua----UGGG---CGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 173712 0.67 0.779571
Target:  5'- gGUGCUGGCGuCGAGcg--CCGCcaCCGGu -3'
miRNA:   3'- -CGCGACCGC-GCUCuaugGGCGc-GGCC- -5'
15677 5' -60.8 NC_004065.1 + 172744 0.68 0.735106
Target:  5'- cCGUccGGUGCGAGGUGCCCGaGCUc- -3'
miRNA:   3'- cGCGa-CCGCGCUCUAUGGGCgCGGcc -5'
15677 5' -60.8 NC_004065.1 + 19426 0.68 0.707437
Target:  5'- gGCGgaGGUGCcGGAgGCaCCGCGCUGc -3'
miRNA:   3'- -CGCgaCCGCGcUCUaUG-GGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 50342 0.68 0.707437
Target:  5'- gGCGCUGGuCGUuucGGGAUAUCCa-GCUGGu -3'
miRNA:   3'- -CGCGACC-GCG---CUCUAUGGGcgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 196721 0.68 0.707437
Target:  5'- aCGCUGgacaugcaGCGCGAGAaguucUACCgCGUGgCGGa -3'
miRNA:   3'- cGCGAC--------CGCGCUCU-----AUGG-GCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 113923 0.68 0.716725
Target:  5'- -aGCUGGagaGCGAGAgggcggggaACCCGgCGCUGa -3'
miRNA:   3'- cgCGACCg--CGCUCUa--------UGGGC-GCGGCc -5'
15677 5' -60.8 NC_004065.1 + 106280 0.68 0.716725
Target:  5'- gGUGCUGGCGC-AGA-ACUCGCaCCGu -3'
miRNA:   3'- -CGCGACCGCGcUCUaUGGGCGcGGCc -5'
15677 5' -60.8 NC_004065.1 + 222897 0.68 0.698093
Target:  5'- gGCGCUGaCGCGGGcccuccucgGUACUCGCGCa-- -3'
miRNA:   3'- -CGCGACcGCGCUC---------UAUGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 24469 0.68 0.725951
Target:  5'- gGCaGCUcggacaugGGCGCGuAGAUgGCaCCGCcGCCGGc -3'
miRNA:   3'- -CG-CGA--------CCGCGC-UCUA-UG-GGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 107766 0.68 0.744185
Target:  5'- -aGCUGGCcgGCGGGGgguuaggACgCCGC-CCGGa -3'
miRNA:   3'- cgCGACCG--CGCUCUa------UG-GGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 70948 0.68 0.744185
Target:  5'- gGUGgaGGCG-GAGAUGuuggagaCgGCGCCGGa -3'
miRNA:   3'- -CGCgaCCGCgCUCUAUg------GgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 120842 0.68 0.698093
Target:  5'- cGUGCacccGGC-CGAGA--CCgGCGCCGGa -3'
miRNA:   3'- -CGCGa---CCGcGCUCUauGGgCGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.