Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15677 | 5' | -60.8 | NC_004065.1 | + | 69393 | 0.71 | 0.536499 |
Target: 5'- gGCGCUGGCGgaacagcugccgaCGGGGcGCCaggugCGCGCCGa -3' miRNA: 3'- -CGCGACCGC-------------GCUCUaUGG-----GCGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 42066 | 0.71 | 0.54669 |
Target: 5'- gGCGCUGGUGUGGcugaccucgcuGAUgugcgcgucGCCgGCGCCGa -3' miRNA: 3'- -CGCGACCGCGCU-----------CUA---------UGGgCGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 124460 | 0.71 | 0.556007 |
Target: 5'- cCGCcgacGGCGCGccGUGCCgcUGCGCCGGg -3' miRNA: 3'- cGCGa---CCGCGCucUAUGG--GCGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 24774 | 0.71 | 0.574774 |
Target: 5'- -gGCcGGCGCGGGuauCUCGCGCCa- -3' miRNA: 3'- cgCGaCCGCGCUCuauGGGCGCGGcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 43590 | 0.7 | 0.631742 |
Target: 5'- aCGC-GGCGCGuGGggcguCCC-CGCCGGg -3' miRNA: 3'- cGCGaCCGCGCuCUau---GGGcGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 97246 | 0.7 | 0.622211 |
Target: 5'- gGCGCacGGCGCuucuGGcgACCuuCGCGCCGGu -3' miRNA: 3'- -CGCGa-CCGCGc---UCuaUGG--GCGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 201361 | 0.7 | 0.612687 |
Target: 5'- cUGCU-GCGCGAGcUGCgCCuCGCCGGg -3' miRNA: 3'- cGCGAcCGCGCUCuAUG-GGcGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 126750 | 0.7 | 0.593681 |
Target: 5'- gGCGCaUGGCGaCGcGGGUGCagCGCGCCa- -3' miRNA: 3'- -CGCG-ACCGC-GC-UCUAUGg-GCGCGGcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 2092 | 0.7 | 0.584212 |
Target: 5'- cGCGCUGcGCGCGu-AUGCCgaGCGUgGGa -3' miRNA: 3'- -CGCGAC-CGCGCucUAUGGg-CGCGgCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 111128 | 0.7 | 0.626023 |
Target: 5'- gGCGCacgaugaagucggcaUGGCgacgguucgacGCGGGcgGCCCGCGCCc- -3' miRNA: 3'- -CGCG---------------ACCG-----------CGCUCuaUGGGCGCGGcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 87030 | 0.7 | 0.612687 |
Target: 5'- -gGggGGUGgGAGAUggACCCGCGgCGGg -3' miRNA: 3'- cgCgaCCGCgCUCUA--UGGGCGCgGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 94014 | 0.7 | 0.622211 |
Target: 5'- gGCGCUGGUcuggggagccaaGCGGGGUGCgaggaaUCGaGCCGGg -3' miRNA: 3'- -CGCGACCG------------CGCUCUAUG------GGCgCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 54834 | 0.7 | 0.603175 |
Target: 5'- aGCGgaGaGCGCGAGAcAacagcagucUCCGCGCCGc -3' miRNA: 3'- -CGCgaC-CGCGCUCUaU---------GGGCGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 124846 | 0.7 | 0.603175 |
Target: 5'- cGCGCUGGUGCGGGAcg-UgGCGaCGGa -3' miRNA: 3'- -CGCGACCGCGCUCUaugGgCGCgGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 151498 | 0.7 | 0.593681 |
Target: 5'- aGCGgccaggacCUGGaCGCucGAGGUcuucCCCGCGCCGGc -3' miRNA: 3'- -CGC--------GACC-GCG--CUCUAu---GGGCGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 117721 | 0.7 | 0.622211 |
Target: 5'- cCGgUGGCgGCGAGcgGCCgCGgaGCCGGa -3' miRNA: 3'- cGCgACCG-CGCUCuaUGG-GCg-CGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 31688 | 0.69 | 0.688702 |
Target: 5'- aGCGaaGGUGCGucGGUGCCCgagcGUGCCGa -3' miRNA: 3'- -CGCgaCCGCGCu-CUAUGGG----CGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 123668 | 0.69 | 0.688702 |
Target: 5'- uCGCacgUGGCGCGc--UGCCCgugcagcaGCGCCGGg -3' miRNA: 3'- cGCG---ACCGCGCucuAUGGG--------CGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 77980 | 0.69 | 0.688702 |
Target: 5'- aCGCUGGcCGCG-GcgAgCCGCcCCGGg -3' miRNA: 3'- cGCGACC-GCGCuCuaUgGGCGcGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 24214 | 0.69 | 0.660311 |
Target: 5'- aCGC-GGUugGCGAGGUuucGCUCGCGCCaGGa -3' miRNA: 3'- cGCGaCCG--CGCUCUA---UGGGCGCGG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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