miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 168621 0.69 0.650798
Target:  5'- gGCuGCUGGCGCu-GGUGCCgCGggcggaGCCGGc -3'
miRNA:   3'- -CG-CGACCGCGcuCUAUGG-GCg-----CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 24214 0.69 0.660311
Target:  5'- aCGC-GGUugGCGAGGUuucGCUCGCGCCaGGa -3'
miRNA:   3'- cGCGaCCG--CGCUCUA---UGGGCGCGG-CC- -5'
15677 5' -60.8 NC_004065.1 + 197415 0.69 0.679269
Target:  5'- -aGCUGGCGUcccuggucGAGAgg--CGCGCCGGc -3'
miRNA:   3'- cgCGACCGCG--------CUCUauggGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 196917 0.69 0.679269
Target:  5'- -gGgUGGCGUGAGAgacGCCgCGCGCUa- -3'
miRNA:   3'- cgCgACCGCGCUCUa--UGG-GCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 31688 0.69 0.688702
Target:  5'- aGCGaaGGUGCGucGGUGCCCgagcGUGCCGa -3'
miRNA:   3'- -CGCgaCCGCGCu-CUAUGGG----CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 77980 0.69 0.688702
Target:  5'- aCGCUGGcCGCG-GcgAgCCGCcCCGGg -3'
miRNA:   3'- cGCGACC-GCGCuCuaUgGGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 133489 0.69 0.660311
Target:  5'- aGUGCUGGCGUu-GAUACguCCGCuaCGGu -3'
miRNA:   3'- -CGCGACCGCGcuCUAUG--GGCGcgGCC- -5'
15677 5' -60.8 NC_004065.1 + 93321 0.69 0.679269
Target:  5'- uGCGUcaucgUGGCGgauaaaagcuCGAGccgGCCCGCcGCCGGc -3'
miRNA:   3'- -CGCG-----ACCGC----------GCUCua-UGGGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 123668 0.69 0.688702
Target:  5'- uCGCacgUGGCGCGc--UGCCCgugcagcaGCGCCGGg -3'
miRNA:   3'- cGCG---ACCGCGCucuAUGGG--------CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 38159 0.68 0.698093
Target:  5'- aCGCUGGaagaCGCG-GcgAUCCGCGCCa- -3'
miRNA:   3'- cGCGACC----GCGCuCuaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 19426 0.68 0.707437
Target:  5'- gGCGgaGGUGCcGGAgGCaCCGCGCUGc -3'
miRNA:   3'- -CGCgaCCGCGcUCUaUG-GGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 24469 0.68 0.725951
Target:  5'- gGCaGCUcggacaugGGCGCGuAGAUgGCaCCGCcGCCGGc -3'
miRNA:   3'- -CG-CGA--------CCGCGC-UCUA-UG-GGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 107766 0.68 0.744185
Target:  5'- -aGCUGGCcgGCGGGGgguuaggACgCCGC-CCGGa -3'
miRNA:   3'- cgCGACCG--CGCUCUa------UG-GGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 74812 0.68 0.698093
Target:  5'- aUGCUGacgaGCGUgGAGAcGCCCGgGUCGGg -3'
miRNA:   3'- cGCGAC----CGCG-CUCUaUGGGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 70948 0.68 0.744185
Target:  5'- gGUGgaGGCG-GAGAUGuuggagaCgGCGCCGGa -3'
miRNA:   3'- -CGCgaCCGCgCUCUAUg------GgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 50342 0.68 0.707437
Target:  5'- gGCGCUGGuCGUuucGGGAUAUCCa-GCUGGu -3'
miRNA:   3'- -CGCGACC-GCG---CUCUAUGGGcgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 106280 0.68 0.716725
Target:  5'- gGUGCUGGCGC-AGA-ACUCGCaCCGu -3'
miRNA:   3'- -CGCGACCGCGcUCUaUGGGCGcGGCc -5'
15677 5' -60.8 NC_004065.1 + 222897 0.68 0.698093
Target:  5'- gGCGCUGaCGCGGGcccuccucgGUACUCGCGCa-- -3'
miRNA:   3'- -CGCGACcGCGCUC---------UAUGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 120842 0.68 0.698093
Target:  5'- cGUGCacccGGC-CGAGA--CCgGCGCCGGa -3'
miRNA:   3'- -CGCGa---CCGcGCUCUauGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 200119 0.68 0.697156
Target:  5'- cGUGCUGuGCGgcaccgaCGAG-UGCCUGCGgCGGu -3'
miRNA:   3'- -CGCGAC-CGC-------GCUCuAUGGGCGCgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.