Results 81 - 100 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15677 | 5' | -60.8 | NC_004065.1 | + | 124711 | 0.67 | 0.779571 |
Target: 5'- -aGCaGGUGCuucAGGUucagGCCCGCGCCGc -3' miRNA: 3'- cgCGaCCGCGc--UCUA----UGGGCGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 123526 | 0.67 | 0.78815 |
Target: 5'- cGgGCUGGUGUGgucguacaGGGUGgCCaGCGCCGc -3' miRNA: 3'- -CgCGACCGCGC--------UCUAUgGG-CGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 225393 | 0.67 | 0.78815 |
Target: 5'- gGCGCUGGCGCuGAuGGUG-CCGCuCCc- -3' miRNA: 3'- -CGCGACCGCG-CU-CUAUgGGCGcGGcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 173712 | 0.67 | 0.779571 |
Target: 5'- gGUGCUGGCGuCGAGcg--CCGCcaCCGGu -3' miRNA: 3'- -CGCGACCGC-GCUCuaugGGCGc-GGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 136511 | 0.67 | 0.779571 |
Target: 5'- aUGgaGGCgGCGAGAcaucuCCCGuCGUCGGu -3' miRNA: 3'- cGCgaCCG-CGCUCUau---GGGC-GCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 126506 | 0.67 | 0.770878 |
Target: 5'- cGCGCUGG-GCGGcucGAU-CCC-CGCaCGGg -3' miRNA: 3'- -CGCGACCgCGCU---CUAuGGGcGCG-GCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 138020 | 0.66 | 0.836821 |
Target: 5'- uCGCUuGCGacaGaAGAUACCCaCGUCGGg -3' miRNA: 3'- cGCGAcCGCg--C-UCUAUGGGcGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 128463 | 0.66 | 0.836821 |
Target: 5'- cCGCgGGCGCGAucaGGcUACCacugccaGCGCCGc -3' miRNA: 3'- cGCGaCCGCGCU---CU-AUGGg------CGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 103784 | 0.66 | 0.843654 |
Target: 5'- aGCaGCUGGUgaucuccGCGAGcg--CCGCGCCGu -3' miRNA: 3'- -CG-CGACCG-------CGCUCuaugGGCGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 98670 | 0.66 | 0.844405 |
Target: 5'- uUGCUGaCGgGGGGgacGCCCGCGCgGa -3' miRNA: 3'- cGCGACcGCgCUCUa--UGGGCGCGgCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 17800 | 0.66 | 0.821176 |
Target: 5'- cGCGuUUGGCGCGAu---CCCGCGUg-- -3' miRNA: 3'- -CGC-GACCGCGCUcuauGGGCGCGgcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 224537 | 0.66 | 0.829076 |
Target: 5'- cGUGCUGcGgGCGAGAcguggaugucGCCCGUGuaGGc -3' miRNA: 3'- -CGCGAC-CgCGCUCUa---------UGGGCGCggCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 66554 | 0.66 | 0.829076 |
Target: 5'- cGCGCgGcGUGCGAGucguuCUCGuCGCUGGc -3' miRNA: 3'- -CGCGaC-CGCGCUCuau--GGGC-GCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 30888 | 0.66 | 0.828293 |
Target: 5'- aGCGCccgcagGGCGuCGGGGUcgcACUCGUguccgucgacaucGCCGGg -3' miRNA: 3'- -CGCGa-----CCGC-GCUCUA---UGGGCG-------------CGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 193516 | 0.66 | 0.821176 |
Target: 5'- --cCUGGCG-GAGAaaUGuaauuugucUCCGCGCCGGg -3' miRNA: 3'- cgcGACCGCgCUCU--AU---------GGGCGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 68262 | 0.66 | 0.821176 |
Target: 5'- gGCuGCUGGCGuCGaAGAUcCUgGCGCUGu -3' miRNA: 3'- -CG-CGACCGC-GC-UCUAuGGgCGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 26360 | 0.66 | 0.847392 |
Target: 5'- gGCGCUGGCGacggcggcggggauaCGGGGcguuccccaUGCCCcCGCCu- -3' miRNA: 3'- -CGCGACCGC---------------GCUCU---------AUGGGcGCGGcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 35470 | 0.66 | 0.821176 |
Target: 5'- cGCGCU-GCGCGG--UGCCCGUGacgacguucaCGGg -3' miRNA: 3'- -CGCGAcCGCGCUcuAUGGGCGCg---------GCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 76376 | 0.66 | 0.813126 |
Target: 5'- cGCGCcGGCGCcgccgcGGAUgaGCUCGCcGCCGu -3' miRNA: 3'- -CGCGaCCGCGc-----UCUA--UGGGCG-CGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 38035 | 0.66 | 0.836821 |
Target: 5'- -gGCUGGCGCuGAG-UGCCa--GUCGGu -3' miRNA: 3'- cgCGACCGCG-CUCuAUGGgcgCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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