miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 113846 0.67 0.770878
Target:  5'- cCGCgGGCGaCGAGuuuggauuUGCCCGCgGCCu- -3'
miRNA:   3'- cGCGaCCGC-GCUCu-------AUGGGCG-CGGcc -5'
15677 5' -60.8 NC_004065.1 + 113923 0.68 0.716725
Target:  5'- -aGCUGGagaGCGAGAgggcggggaACCCGgCGCUGa -3'
miRNA:   3'- cgCGACCg--CGCUCUa--------UGGGC-GCGGCc -5'
15677 5' -60.8 NC_004065.1 + 117721 0.7 0.622211
Target:  5'- cCGgUGGCgGCGAGcgGCCgCGgaGCCGGa -3'
miRNA:   3'- cGCgACCG-CGCUCuaUGG-GCg-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 118364 0.71 0.56537
Target:  5'- cGCGC-GGCGaCGAGAgacGCCauggGCGCCGc -3'
miRNA:   3'- -CGCGaCCGC-GCUCUa--UGGg---CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 120560 0.72 0.500945
Target:  5'- gGCGgUcGGCGCGAGcgGgcgggaccuCCgGCGCCGGu -3'
miRNA:   3'- -CGCgA-CCGCGCUCuaU---------GGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 120842 0.68 0.698093
Target:  5'- cGUGCacccGGC-CGAGA--CCgGCGCCGGa -3'
miRNA:   3'- -CGCGa---CCGcGCUCUauGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 122824 0.71 0.56537
Target:  5'- gGCGCUGGCGacCGAGAUcaACCaGCGCauGa -3'
miRNA:   3'- -CGCGACCGC--GCUCUA--UGGgCGCGgcC- -5'
15677 5' -60.8 NC_004065.1 + 123526 0.67 0.78815
Target:  5'- cGgGCUGGUGUGgucguacaGGGUGgCCaGCGCCGc -3'
miRNA:   3'- -CgCGACCGCGC--------UCUAUgGG-CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 123668 0.69 0.688702
Target:  5'- uCGCacgUGGCGCGc--UGCCCgugcagcaGCGCCGGg -3'
miRNA:   3'- cGCG---ACCGCGCucuAUGGG--------CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 123912 0.73 0.456964
Target:  5'- aGCGCgccacGUGCGAGGUGauCCUGaCGCCGGu -3'
miRNA:   3'- -CGCGac---CGCGCUCUAU--GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 124460 0.71 0.556007
Target:  5'- cCGCcgacGGCGCGccGUGCCgcUGCGCCGGg -3'
miRNA:   3'- cGCGa---CCGCGCucUAUGG--GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 124711 0.67 0.779571
Target:  5'- -aGCaGGUGCuucAGGUucagGCCCGCGCCGc -3'
miRNA:   3'- cgCGaCCGCGc--UCUA----UGGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 124846 0.7 0.603175
Target:  5'- cGCGCUGGUGCGGGAcg-UgGCGaCGGa -3'
miRNA:   3'- -CGCGACCGCGCUCUaugGgCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 125258 0.69 0.639367
Target:  5'- cGCuGCUGGCGUacguGAGcgcgcugcacgACCCGCGCCu- -3'
miRNA:   3'- -CG-CGACCGCG----CUCua---------UGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 125378 0.67 0.762078
Target:  5'- uGgGCgacGGCGCGGuGGUGCCgGCGgCGu -3'
miRNA:   3'- -CgCGa--CCGCGCU-CUAUGGgCGCgGCc -5'
15677 5' -60.8 NC_004065.1 + 125628 0.77 0.279524
Target:  5'- gGCGCUGGaGCugaccaAGGUGCgCGCGCCGGa -3'
miRNA:   3'- -CGCGACCgCGc-----UCUAUGgGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 125698 0.67 0.770878
Target:  5'- cGCGCaucaUGGUGgguaaccugccCGAGGcGCUgGCGCCGGc -3'
miRNA:   3'- -CGCG----ACCGC-----------GCUCUaUGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 126288 0.66 0.804934
Target:  5'- cGUGCUGaagguGgGCGAGcgGCUCgugGCGCUGGa -3'
miRNA:   3'- -CGCGAC-----CgCGCUCuaUGGG---CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 126488 0.72 0.509967
Target:  5'- aUGUUGGCGCGcuGcACCCGCGUCGc -3'
miRNA:   3'- cGCGACCGCGCucUaUGGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 126506 0.67 0.770878
Target:  5'- cGCGCUGG-GCGGcucGAU-CCC-CGCaCGGg -3'
miRNA:   3'- -CGCGACCgCGCU---CUAuGGGcGCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.