miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 151498 0.7 0.593681
Target:  5'- aGCGgccaggacCUGGaCGCucGAGGUcuucCCCGCGCCGGc -3'
miRNA:   3'- -CGC--------GACC-GCG--CUCUAu---GGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 149904 0.72 0.473441
Target:  5'- cGCGCUgcGGCGCGuGcaggGCCUgccgacgGCGCCGGu -3'
miRNA:   3'- -CGCGA--CCGCGCuCua--UGGG-------CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 146040 0.66 0.812313
Target:  5'- cGUGCaUGaggaucuGUGCGAGc-GCCCGCGaCCGGc -3'
miRNA:   3'- -CGCG-AC-------CGCGCUCuaUGGGCGC-GGCC- -5'
15677 5' -60.8 NC_004065.1 + 143202 0.66 0.829076
Target:  5'- cGCGCgaGGUGgGcAGcugGCCCugGUGCCGGa -3'
miRNA:   3'- -CGCGa-CCGCgC-UCua-UGGG--CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 143117 0.66 0.804934
Target:  5'- cGCGCgccgccgaGG-GCGAGAccggcgccgcgACCUGCGUCGGu -3'
miRNA:   3'- -CGCGa-------CCgCGCUCUa----------UGGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 142972 0.68 0.725951
Target:  5'- aGCGa-GGCGCccaGGAccCCCGaCGCCGGg -3'
miRNA:   3'- -CGCgaCCGCGc--UCUauGGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 142666 0.68 0.725951
Target:  5'- cGCGCcGGCagGCGAaaGAUgGCCCGCGCg-- -3'
miRNA:   3'- -CGCGaCCG--CGCU--CUA-UGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 142402 0.72 0.48135
Target:  5'- cGCGCUcGCGCGGGccaucuuucgccUGCCggCGCGCCGGc -3'
miRNA:   3'- -CGCGAcCGCGCUCu-----------AUGG--GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 138020 0.66 0.836821
Target:  5'- uCGCUuGCGacaGaAGAUACCCaCGUCGGg -3'
miRNA:   3'- cGCGAcCGCg--C-UCUAUGGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 136511 0.67 0.779571
Target:  5'- aUGgaGGCgGCGAGAcaucuCCCGuCGUCGGu -3'
miRNA:   3'- cGCgaCCG-CGCUCUau---GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 133489 0.69 0.660311
Target:  5'- aGUGCUGGCGUu-GAUACguCCGCuaCGGu -3'
miRNA:   3'- -CGCGACCGCGcuCUAUG--GGCGcgGCC- -5'
15677 5' -60.8 NC_004065.1 + 128851 0.71 0.574774
Target:  5'- gGCgGCUGGCGCGugcGGAUGCgccuUCGCcGCCGa -3'
miRNA:   3'- -CG-CGACCGCGC---UCUAUG----GGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 128463 0.66 0.836821
Target:  5'- cCGCgGGCGCGAucaGGcUACCacugccaGCGCCGc -3'
miRNA:   3'- cGCGaCCGCGCU---CU-AUGGg------CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 128259 0.71 0.52821
Target:  5'- -aGUUGGCGCGGcgggccaccucGGUgACCCGCGgCGGc -3'
miRNA:   3'- cgCGACCGCGCU-----------CUA-UGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 127741 0.66 0.826722
Target:  5'- cGCGCcuuguccucgucggUGGCGcCGGGGUcggguCCCGCgGCCa- -3'
miRNA:   3'- -CGCG--------------ACCGC-GCUCUAu----GGGCG-CGGcc -5'
15677 5' -60.8 NC_004065.1 + 127460 0.66 0.844405
Target:  5'- aCGCugaUGGcCGCGGGAcccgACCCcgGCGCCa- -3'
miRNA:   3'- cGCG---ACC-GCGCUCUa---UGGG--CGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 126750 0.7 0.593681
Target:  5'- gGCGCaUGGCGaCGcGGGUGCagCGCGCCa- -3'
miRNA:   3'- -CGCG-ACCGC-GC-UCUAUGg-GCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 126506 0.67 0.770878
Target:  5'- cGCGCUGG-GCGGcucGAU-CCC-CGCaCGGg -3'
miRNA:   3'- -CGCGACCgCGCU---CUAuGGGcGCG-GCC- -5'
15677 5' -60.8 NC_004065.1 + 126488 0.72 0.509967
Target:  5'- aUGUUGGCGCGcuGcACCCGCGUCGc -3'
miRNA:   3'- cGCGACCGCGCucUaUGGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 126288 0.66 0.804934
Target:  5'- cGUGCUGaagguGgGCGAGcgGCUCgugGCGCUGGa -3'
miRNA:   3'- -CGCGAC-----CgCGCUCuaUGGG---CGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.