miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 110225 0.66 0.813126
Target:  5'- aGCGCcaGGaCGuCGucGGAga-CCGCGCCGGa -3'
miRNA:   3'- -CGCGa-CC-GC-GC--UCUaugGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 107766 0.68 0.744185
Target:  5'- -aGCUGGCcgGCGGGGgguuaggACgCCGC-CCGGa -3'
miRNA:   3'- cgCGACCG--CGCUCUa------UG-GGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 106280 0.68 0.716725
Target:  5'- gGUGCUGGCGC-AGA-ACUCGCaCCGu -3'
miRNA:   3'- -CGCGACCGCGcUCUaUGGGCGcGGCc -5'
15677 5' -60.8 NC_004065.1 + 103784 0.66 0.843654
Target:  5'- aGCaGCUGGUgaucuccGCGAGcg--CCGCGCCGu -3'
miRNA:   3'- -CG-CGACCG-------CGCUCuaugGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 101798 0.68 0.725951
Target:  5'- cCGCUacccGCGCGcGuUAUCUGCGCCGGc -3'
miRNA:   3'- cGCGAc---CGCGCuCuAUGGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 99129 0.67 0.762078
Target:  5'- aGCGCgugGGCGaCGAcGAccCCCGUuCCGGc -3'
miRNA:   3'- -CGCGa--CCGC-GCU-CUauGGGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 98670 0.66 0.844405
Target:  5'- uUGCUGaCGgGGGGgacGCCCGCGCgGa -3'
miRNA:   3'- cGCGACcGCgCUCUa--UGGGCGCGgCc -5'
15677 5' -60.8 NC_004065.1 + 97789 0.66 0.813126
Target:  5'- gGCGCUGGCGCu-GA---UCGCGUCGu -3'
miRNA:   3'- -CGCGACCGCGcuCUaugGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 97506 0.67 0.762078
Target:  5'- gGCGCgaaGGuCGCcAGAagcGCCgUGCGCCGGa -3'
miRNA:   3'- -CGCGa--CC-GCGcUCUa--UGG-GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 97246 0.7 0.622211
Target:  5'- gGCGCacGGCGCuucuGGcgACCuuCGCGCCGGu -3'
miRNA:   3'- -CGCGa-CCGCGc---UCuaUGG--GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 94014 0.7 0.622211
Target:  5'- gGCGCUGGUcuggggagccaaGCGGGGUGCgaggaaUCGaGCCGGg -3'
miRNA:   3'- -CGCGACCG------------CGCUCUAUG------GGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 93321 0.69 0.679269
Target:  5'- uGCGUcaucgUGGCGgauaaaagcuCGAGccgGCCCGCcGCCGGc -3'
miRNA:   3'- -CGCG-----ACCGC----------GCUCua-UGGGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 92305 0.72 0.500945
Target:  5'- aGCGC--GCGUGAGAUGCCucgagCGCGCCa- -3'
miRNA:   3'- -CGCGacCGCGCUCUAUGG-----GCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 91127 0.74 0.375751
Target:  5'- uCGCUGaGCGCGGGGUcguagaACCCGUGCUcgaGGa -3'
miRNA:   3'- cGCGAC-CGCGCUCUA------UGGGCGCGG---CC- -5'
15677 5' -60.8 NC_004065.1 + 90117 0.67 0.770878
Target:  5'- cCGCUGGCGCcgccggccgGAGGc-CCCGCgGCCa- -3'
miRNA:   3'- cGCGACCGCG---------CUCUauGGGCG-CGGcc -5'
15677 5' -60.8 NC_004065.1 + 87030 0.7 0.612687
Target:  5'- -gGggGGUGgGAGAUggACCCGCGgCGGg -3'
miRNA:   3'- cgCgaCCGCgCUCUA--UGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 85904 0.66 0.813126
Target:  5'- gGCGCUGGCgGUGAcGAU-CUgGUGCCu- -3'
miRNA:   3'- -CGCGACCG-CGCU-CUAuGGgCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 85790 0.75 0.35336
Target:  5'- gGCGaccgaGGCGCGAGA-ACCgGCGUCGGc -3'
miRNA:   3'- -CGCga---CCGCGCUCUaUGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 82410 0.71 0.556007
Target:  5'- -gGCUGGUGCcucgccagGAGGUACagcguCCGCGCCGc -3'
miRNA:   3'- cgCGACCGCG--------CUCUAUG-----GGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 77980 0.69 0.688702
Target:  5'- aCGCUGGcCGCG-GcgAgCCGCcCCGGg -3'
miRNA:   3'- cGCGACC-GCGCuCuaUgGGCGcGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.