miRNA display CGI


Results 81 - 100 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 76376 0.66 0.813126
Target:  5'- cGCGCcGGCGCcgccgcGGAUgaGCUCGCcGCCGu -3'
miRNA:   3'- -CGCGaCCGCGc-----UCUA--UGGGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 74812 0.68 0.698093
Target:  5'- aUGCUGacgaGCGUgGAGAcGCCCGgGUCGGg -3'
miRNA:   3'- cGCGAC----CGCG-CUCUaUGGGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 70948 0.68 0.744185
Target:  5'- gGUGgaGGCG-GAGAUGuuggagaCgGCGCCGGa -3'
miRNA:   3'- -CGCgaCCGCgCUCUAUg------GgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 69393 0.71 0.536499
Target:  5'- gGCGCUGGCGgaacagcugccgaCGGGGcGCCaggugCGCGCCGa -3'
miRNA:   3'- -CGCGACCGC-------------GCUCUaUGG-----GCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 68262 0.66 0.821176
Target:  5'- gGCuGCUGGCGuCGaAGAUcCUgGCGCUGu -3'
miRNA:   3'- -CG-CGACCGC-GC-UCUAuGGgCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 66554 0.66 0.829076
Target:  5'- cGCGCgGcGUGCGAGucguuCUCGuCGCUGGc -3'
miRNA:   3'- -CGCGaC-CGCGCUCuau--GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 66395 0.67 0.779571
Target:  5'- -aGCUGGCGCcGGuccgcgGCCCagcGCGCCa- -3'
miRNA:   3'- cgCGACCGCGcUCua----UGGG---CGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 66130 0.76 0.285698
Target:  5'- gGCGCUGGCGCGcuGGGccgcggACCgGCGCCa- -3'
miRNA:   3'- -CGCGACCGCGC--UCUa-----UGGgCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 63313 0.68 0.744185
Target:  5'- cGCGCgacagcaGGUcCGGGAUcgucGCCucgCGCGCCGGa -3'
miRNA:   3'- -CGCGa------CCGcGCUCUA----UGG---GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 62105 0.66 0.813126
Target:  5'- cGCGCggGGCGCGAcaGcgGCgCGaCGCCu- -3'
miRNA:   3'- -CGCGa-CCGCGCU--CuaUGgGC-GCGGcc -5'
15677 5' -60.8 NC_004065.1 + 54834 0.7 0.603175
Target:  5'- aGCGgaGaGCGCGAGAcAacagcagucUCCGCGCCGc -3'
miRNA:   3'- -CGCgaC-CGCGCUCUaU---------GGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 50342 0.68 0.707437
Target:  5'- gGCGCUGGuCGUuucGGGAUAUCCa-GCUGGu -3'
miRNA:   3'- -CGCGACC-GCG---CUCUAUGGGcgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 43590 0.7 0.631742
Target:  5'- aCGC-GGCGCGuGGggcguCCC-CGCCGGg -3'
miRNA:   3'- cGCGaCCGCGCuCUau---GGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 43350 0.67 0.770878
Target:  5'- gGCGCcgGGuCGCG-GAUGCCCGgacCGuCCGa -3'
miRNA:   3'- -CGCGa-CC-GCGCuCUAUGGGC---GC-GGCc -5'
15677 5' -60.8 NC_004065.1 + 42673 0.66 0.804934
Target:  5'- aCGCUGaCGCGaAGcUGCUCGCGuUCGGa -3'
miRNA:   3'- cGCGACcGCGC-UCuAUGGGCGC-GGCC- -5'
15677 5' -60.8 NC_004065.1 + 42066 0.71 0.54669
Target:  5'- gGCGCUGGUGUGGcugaccucgcuGAUgugcgcgucGCCgGCGCCGa -3'
miRNA:   3'- -CGCGACCGCGCU-----------CUA---------UGGgCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 40243 0.66 0.829076
Target:  5'- aGCGUUGGCgGCGGuGUACagacaccgucaaCgGCGUCGGg -3'
miRNA:   3'- -CGCGACCG-CGCUcUAUG------------GgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 38420 0.71 0.52821
Target:  5'- cCGCUGGCGCG-GAU-CgCCGCGUCu- -3'
miRNA:   3'- cGCGACCGCGCuCUAuG-GGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 38159 0.68 0.698093
Target:  5'- aCGCUGGaagaCGCG-GcgAUCCGCGCCa- -3'
miRNA:   3'- cGCGACC----GCGCuCuaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 38035 0.66 0.836821
Target:  5'- -gGCUGGCGCuGAG-UGCCa--GUCGGu -3'
miRNA:   3'- cgCGACCGCG-CUCuAUGGgcgCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.