miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 74812 0.68 0.698093
Target:  5'- aUGCUGacgaGCGUgGAGAcGCCCGgGUCGGg -3'
miRNA:   3'- cGCGAC----CGCG-CUCUaUGGGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 38159 0.68 0.698093
Target:  5'- aCGCUGGaagaCGCG-GcgAUCCGCGCCa- -3'
miRNA:   3'- cGCGACC----GCGCuCuaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 123668 0.69 0.688702
Target:  5'- uCGCacgUGGCGCGc--UGCCCgugcagcaGCGCCGGg -3'
miRNA:   3'- cGCG---ACCGCGCucuAUGGG--------CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 77980 0.69 0.688702
Target:  5'- aCGCUGGcCGCG-GcgAgCCGCcCCGGg -3'
miRNA:   3'- cGCGACC-GCGCuCuaUgGGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 31688 0.69 0.688702
Target:  5'- aGCGaaGGUGCGucGGUGCCCgagcGUGCCGa -3'
miRNA:   3'- -CGCgaCCGCGCu-CUAUGGG----CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 93321 0.69 0.679269
Target:  5'- uGCGUcaucgUGGCGgauaaaagcuCGAGccgGCCCGCcGCCGGc -3'
miRNA:   3'- -CGCG-----ACCGC----------GCUCua-UGGGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 133489 0.69 0.660311
Target:  5'- aGUGCUGGCGUu-GAUACguCCGCuaCGGu -3'
miRNA:   3'- -CGCGACCGCGcuCUAUG--GGCGcgGCC- -5'
15677 5' -60.8 NC_004065.1 + 24214 0.69 0.660311
Target:  5'- aCGC-GGUugGCGAGGUuucGCUCGCGCCaGGa -3'
miRNA:   3'- cGCGaCCG--CGCUCUA---UGGGCGCGG-CC- -5'
15677 5' -60.8 NC_004065.1 + 168621 0.69 0.650798
Target:  5'- gGCuGCUGGCGCu-GGUGCCgCGggcggaGCCGGc -3'
miRNA:   3'- -CG-CGACCGCGcuCUAUGG-GCg-----CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 97246 0.7 0.622211
Target:  5'- gGCGCacGGCGCuucuGGcgACCuuCGCGCCGGu -3'
miRNA:   3'- -CGCGa-CCGCGc---UCuaUGG--GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 201361 0.7 0.612687
Target:  5'- cUGCU-GCGCGAGcUGCgCCuCGCCGGg -3'
miRNA:   3'- cGCGAcCGCGCUCuAUG-GGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 82410 0.71 0.556007
Target:  5'- -gGCUGGUGCcucgccagGAGGUACagcguCCGCGCCGc -3'
miRNA:   3'- cgCGACCGCG--------CUCUAUG-----GGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 38420 0.71 0.52821
Target:  5'- cCGCUGGCGCG-GAU-CgCCGCGUCu- -3'
miRNA:   3'- cGCGACCGCGCuCUAuG-GGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 128259 0.71 0.52821
Target:  5'- -aGUUGGCGCGGcgggccaccucGGUgACCCGCGgCGGc -3'
miRNA:   3'- cgCGACCGCGCU-----------CUA-UGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 92305 0.72 0.500945
Target:  5'- aGCGC--GCGUGAGAUGCCucgagCGCGCCa- -3'
miRNA:   3'- -CGCGacCGCGCUCUAUGG-----GCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 149904 0.72 0.473441
Target:  5'- cGCGCUgcGGCGCGuGcaggGCCUgccgacgGCGCCGGu -3'
miRNA:   3'- -CGCGA--CCGCGCuCua--UGGG-------CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 123912 0.73 0.456964
Target:  5'- aGCGCgccacGUGCGAGGUGauCCUGaCGCCGGu -3'
miRNA:   3'- -CGCGac---CGCGCUCUAU--GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 32927 0.74 0.375751
Target:  5'- gGCGCU-GCGCGAGAa--CCGCGCCc- -3'
miRNA:   3'- -CGCGAcCGCGCUCUaugGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 125628 0.77 0.279524
Target:  5'- gGCGCUGGaGCugaccaAGGUGCgCGCGCCGGa -3'
miRNA:   3'- -CGCGACCgCGc-----UCUAUGgGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 38035 0.66 0.836821
Target:  5'- -gGCUGGCGCuGAG-UGCCa--GUCGGu -3'
miRNA:   3'- cgCGACCGCG-CUCuAUGGgcgCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.