miRNA display CGI


Results 101 - 117 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 87030 0.7 0.612687
Target:  5'- -gGggGGUGgGAGAUggACCCGCGgCGGg -3'
miRNA:   3'- cgCgaCCGCgCUCUA--UGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 117721 0.7 0.622211
Target:  5'- cCGgUGGCgGCGAGcgGCCgCGgaGCCGGa -3'
miRNA:   3'- cGCgACCG-CGCUCuaUGG-GCg-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 196721 0.68 0.707437
Target:  5'- aCGCUGgacaugcaGCGCGAGAaguucUACCgCGUGgCGGa -3'
miRNA:   3'- cGCGAC--------CGCGCUCU-----AUGG-GCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 50342 0.68 0.707437
Target:  5'- gGCGCUGGuCGUuucGGGAUAUCCa-GCUGGu -3'
miRNA:   3'- -CGCGACC-GCG---CUCUAUGGGcgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 120842 0.68 0.698093
Target:  5'- cGUGCacccGGC-CGAGA--CCgGCGCCGGa -3'
miRNA:   3'- -CGCGa---CCGcGCUCUauGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 222897 0.68 0.698093
Target:  5'- gGCGCUGaCGCGGGcccuccucgGUACUCGCGCa-- -3'
miRNA:   3'- -CGCGACcGCGCUC---------UAUGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 200119 0.68 0.697156
Target:  5'- cGUGCUGuGCGgcaccgaCGAG-UGCCUGCGgCGGu -3'
miRNA:   3'- -CGCGAC-CGC-------GCUCuAUGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 209245 0.69 0.679269
Target:  5'- cCGC-GGUGCGAGAUAauaugcUCCGCggGCUGGa -3'
miRNA:   3'- cGCGaCCGCGCUCUAU------GGGCG--CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 196917 0.69 0.679269
Target:  5'- -gGgUGGCGUGAGAgacGCCgCGCGCUa- -3'
miRNA:   3'- cgCgACCGCGCUCUa--UGG-GCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 197415 0.69 0.679269
Target:  5'- -aGCUGGCGUcccuggucGAGAgg--CGCGCCGGc -3'
miRNA:   3'- cgCGACCGCG--------CUCUauggGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 224119 0.69 0.679269
Target:  5'- ----cGGC-CGAGAUGgCCGgGCCGGg -3'
miRNA:   3'- cgcgaCCGcGCUCUAUgGGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 229596 0.69 0.645085
Target:  5'- uCGCUGGUcgaGCGAccgcccggguuucgaGAUGCCCGUcguaacgcgacGCCGGu -3'
miRNA:   3'- cGCGACCG---CGCU---------------CUAUGGGCG-----------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 125258 0.69 0.639367
Target:  5'- cGCuGCUGGCGUacguGAGcgcgcugcacgACCCGCGCCu- -3'
miRNA:   3'- -CG-CGACCGCG----CUCua---------UGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 43590 0.7 0.631742
Target:  5'- aCGC-GGCGCGuGGggcguCCC-CGCCGGg -3'
miRNA:   3'- cGCGaCCGCGCuCUau---GGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 111128 0.7 0.626023
Target:  5'- gGCGCacgaugaagucggcaUGGCgacgguucgacGCGGGcgGCCCGCGCCc- -3'
miRNA:   3'- -CGCG---------------ACCG-----------CGCUCuaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 94014 0.7 0.622211
Target:  5'- gGCGCUGGUcuggggagccaaGCGGGGUGCgaggaaUCGaGCCGGg -3'
miRNA:   3'- -CGCGACCG------------CGCUCUAUG------GGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 25031 1.1 0.001616
Target:  5'- uGCGCUGGCGCGAGAUACCCGCGCCGGc -3'
miRNA:   3'- -CGCGACCGCGCUCUAUGGGCGCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.