miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 229596 0.69 0.645085
Target:  5'- uCGCUGGUcgaGCGAccgcccggguuucgaGAUGCCCGUcguaacgcgacGCCGGu -3'
miRNA:   3'- cGCGACCG---CGCU---------------CUAUGGGCG-----------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 111128 0.7 0.626023
Target:  5'- gGCGCacgaugaagucggcaUGGCgacgguucgacGCGGGcgGCCCGCGCCc- -3'
miRNA:   3'- -CGCG---------------ACCG-----------CGCUCuaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 118364 0.71 0.56537
Target:  5'- cGCGC-GGCGaCGAGAgacGCCauggGCGCCGc -3'
miRNA:   3'- -CGCGaCCGC-GCUCUa--UGGg---CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 123912 0.73 0.456964
Target:  5'- aGCGCgccacGUGCGAGGUGauCCUGaCGCCGGu -3'
miRNA:   3'- -CGCGac---CGCGCUCUAU--GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 36209 0.68 0.725951
Target:  5'- aGCaGC-GGCGCGAGuccgacgACCUGCgGCCGc -3'
miRNA:   3'- -CG-CGaCCGCGCUCua-----UGGGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 200119 0.68 0.697156
Target:  5'- cGUGCUGuGCGgcaccgaCGAG-UGCCUGCGgCGGu -3'
miRNA:   3'- -CGCGAC-CGC-------GCUCuAUGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 117721 0.7 0.622211
Target:  5'- cCGgUGGCgGCGAGcgGCCgCGgaGCCGGa -3'
miRNA:   3'- cGCgACCG-CGCUCuaUGG-GCg-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 32927 0.74 0.375751
Target:  5'- gGCGCU-GCGCGAGAa--CCGCGCCc- -3'
miRNA:   3'- -CGCGAcCGCGCUCUaugGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 209245 0.69 0.679269
Target:  5'- cCGC-GGUGCGAGAUAauaugcUCCGCggGCUGGa -3'
miRNA:   3'- cGCGaCCGCGCUCUAU------GGGCG--CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 125628 0.77 0.279524
Target:  5'- gGCGCUGGaGCugaccaAGGUGCgCGCGCCGGa -3'
miRNA:   3'- -CGCGACCgCGc-----UCUAUGgGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 94014 0.7 0.622211
Target:  5'- gGCGCUGGUcuggggagccaaGCGGGGUGCgaggaaUCGaGCCGGg -3'
miRNA:   3'- -CGCGACCG------------CGCUCUAUG------GGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 224119 0.69 0.679269
Target:  5'- ----cGGC-CGAGAUGgCCGgGCCGGg -3'
miRNA:   3'- cgcgaCCGcGCUCUAUgGGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 54834 0.7 0.603175
Target:  5'- aGCGgaGaGCGCGAGAcAacagcagucUCCGCGCCGc -3'
miRNA:   3'- -CGCgaC-CGCGCUCUaU---------GGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 128851 0.71 0.574774
Target:  5'- gGCgGCUGGCGCGugcGGAUGCgccuUCGCcGCCGa -3'
miRNA:   3'- -CG-CGACCGCGC---UCUAUG----GGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 38420 0.71 0.52821
Target:  5'- cCGCUGGCGCG-GAU-CgCCGCGUCu- -3'
miRNA:   3'- cGCGACCGCGCuCUAuG-GGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 149904 0.72 0.473441
Target:  5'- cGCGCUgcGGCGCGuGcaggGCCUgccgacgGCGCCGGu -3'
miRNA:   3'- -CGCGA--CCGCGCuCua--UGGG-------CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 63313 0.68 0.744185
Target:  5'- cGCGCgacagcaGGUcCGGGAUcgucGCCucgCGCGCCGGa -3'
miRNA:   3'- -CGCGa------CCGcGCUCUA----UGG---GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 142666 0.68 0.725951
Target:  5'- cGCGCcGGCagGCGAaaGAUgGCCCGCGCg-- -3'
miRNA:   3'- -CGCGaCCG--CGCU--CUA-UGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 196721 0.68 0.707437
Target:  5'- aCGCUGgacaugcaGCGCGAGAaguucUACCgCGUGgCGGa -3'
miRNA:   3'- cGCGAC--------CGCGCUCU-----AUGG-GCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 222897 0.68 0.698093
Target:  5'- gGCGCUGaCGCGGGcccuccucgGUACUCGCGCa-- -3'
miRNA:   3'- -CGCGACcGCGCUC---------UAUGGGCGCGgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.