miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 125378 0.67 0.762078
Target:  5'- uGgGCgacGGCGCGGuGGUGCCgGCGgCGu -3'
miRNA:   3'- -CgCGa--CCGCGCU-CUAUGGgCGCgGCc -5'
15677 5' -60.8 NC_004065.1 + 200119 0.68 0.697156
Target:  5'- cGUGCUGuGCGgcaccgaCGAG-UGCCUGCGgCGGu -3'
miRNA:   3'- -CGCGAC-CGC-------GCUCuAUGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 151498 0.7 0.593681
Target:  5'- aGCGgccaggacCUGGaCGCucGAGGUcuucCCCGCGCCGGc -3'
miRNA:   3'- -CGC--------GACC-GCG--CUCUAu---GGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 188897 0.67 0.762078
Target:  5'- cCGCUGGuCGUGGugugguacGUGCUCGCcGCCGGc -3'
miRNA:   3'- cGCGACC-GCGCUc-------UAUGGGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 128851 0.71 0.574774
Target:  5'- gGCgGCUGGCGCGugcGGAUGCgccuUCGCcGCCGa -3'
miRNA:   3'- -CG-CGACCGCGC---UCUAUG----GGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 62105 0.66 0.813126
Target:  5'- cGCGCggGGCGCGAcaGcgGCgCGaCGCCu- -3'
miRNA:   3'- -CGCGa-CCGCGCU--CuaUGgGC-GCGGcc -5'
15677 5' -60.8 NC_004065.1 + 54834 0.7 0.603175
Target:  5'- aGCGgaGaGCGCGAGAcAacagcagucUCCGCGCCGc -3'
miRNA:   3'- -CGCgaC-CGCGCUCUaU---------GGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 85904 0.66 0.813126
Target:  5'- gGCGCUGGCgGUGAcGAU-CUgGUGCCu- -3'
miRNA:   3'- -CGCGACCG-CGCU-CUAuGGgCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 97789 0.66 0.813126
Target:  5'- gGCGCUGGCGCu-GA---UCGCGUCGu -3'
miRNA:   3'- -CGCGACCGCGcuCUaugGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 126288 0.66 0.804934
Target:  5'- cGUGCUGaagguGgGCGAGcgGCUCgugGCGCUGGa -3'
miRNA:   3'- -CGCGAC-----CgCGCUCuaUGGG---CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 27233 0.67 0.787297
Target:  5'- uGCuGCUGGCguuguuuuugGCGAGcuccggaGCCCGCcgcggccGCCGGa -3'
miRNA:   3'- -CG-CGACCG----------CGCUCua-----UGGGCG-------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 177038 0.67 0.774369
Target:  5'- cGCGcCUcgccucaaaccuuggGGCGCGAGGagucuCCCGCGUCa- -3'
miRNA:   3'- -CGC-GA---------------CCGCGCUCUau---GGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 125698 0.67 0.770878
Target:  5'- cGCGCaucaUGGUGgguaaccugccCGAGGcGCUgGCGCCGGc -3'
miRNA:   3'- -CGCG----ACCGC-----------GCUCUaUGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 99129 0.67 0.762078
Target:  5'- aGCGCgugGGCGaCGAcGAccCCCGUuCCGGc -3'
miRNA:   3'- -CGCGa--CCGC-GCU-CUauGGGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 101798 0.68 0.725951
Target:  5'- cCGCUacccGCGCGcGuUAUCUGCGCCGGc -3'
miRNA:   3'- cGCGAc---CGCGCuCuAUGGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 113923 0.68 0.716725
Target:  5'- -aGCUGGagaGCGAGAgggcggggaACCCGgCGCUGa -3'
miRNA:   3'- cgCGACCg--CGCUCUa--------UGGGC-GCGGCc -5'
15677 5' -60.8 NC_004065.1 + 120842 0.68 0.698093
Target:  5'- cGUGCacccGGC-CGAGA--CCgGCGCCGGa -3'
miRNA:   3'- -CGCGa---CCGcGCUCUauGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 197415 0.69 0.679269
Target:  5'- -aGCUGGCGUcccuggucGAGAgg--CGCGCCGGc -3'
miRNA:   3'- cgCGACCGCG--------CUCUauggGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 125258 0.69 0.639367
Target:  5'- cGCuGCUGGCGUacguGAGcgcgcugcacgACCCGCGCCu- -3'
miRNA:   3'- -CG-CGACCGCG----CUCua---------UGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 117721 0.7 0.622211
Target:  5'- cCGgUGGCgGCGAGcgGCCgCGgaGCCGGa -3'
miRNA:   3'- cGCgACCG-CGCUCuaUGG-GCg-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.