miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 125378 0.67 0.762078
Target:  5'- uGgGCgacGGCGCGGuGGUGCCgGCGgCGu -3'
miRNA:   3'- -CgCGa--CCGCGCU-CUAUGGgCGCgGCc -5'
15677 5' -60.8 NC_004065.1 + 188897 0.67 0.762078
Target:  5'- cCGCUGGuCGUGGugugguacGUGCUCGCcGCCGGc -3'
miRNA:   3'- cGCGACC-GCGCUc-------UAUGGGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 99129 0.67 0.762078
Target:  5'- aGCGCgugGGCGaCGAcGAccCCCGUuCCGGc -3'
miRNA:   3'- -CGCGa--CCGC-GCU-CUauGGGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 136511 0.67 0.779571
Target:  5'- aUGgaGGCgGCGAGAcaucuCCCGuCGUCGGu -3'
miRNA:   3'- cGCgaCCG-CGCUCUau---GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 142666 0.68 0.725951
Target:  5'- cGCGCcGGCagGCGAaaGAUgGCCCGCGCg-- -3'
miRNA:   3'- -CGCGaCCG--CGCU--CUA-UGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 101798 0.68 0.725951
Target:  5'- cCGCUacccGCGCGcGuUAUCUGCGCCGGc -3'
miRNA:   3'- cGCGAc---CGCGCuCuAUGGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 120560 0.72 0.500945
Target:  5'- gGCGgUcGGCGCGAGcgGgcgggaccuCCgGCGCCGGu -3'
miRNA:   3'- -CGCgA-CCGCGCUCuaU---------GGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 19426 0.68 0.707437
Target:  5'- gGCGgaGGUGCcGGAgGCaCCGCGCUGc -3'
miRNA:   3'- -CGCgaCCGCGcUCUaUG-GGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 90117 0.67 0.770878
Target:  5'- cCGCUGGCGCcgccggccgGAGGc-CCCGCgGCCa- -3'
miRNA:   3'- cGCGACCGCG---------CUCUauGGGCG-CGGcc -5'
15677 5' -60.8 NC_004065.1 + 103784 0.66 0.843654
Target:  5'- aGCaGCUGGUgaucuccGCGAGcg--CCGCGCCGu -3'
miRNA:   3'- -CG-CGACCG-------CGCUCuaugGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 98670 0.66 0.844405
Target:  5'- uUGCUGaCGgGGGGgacGCCCGCGCgGa -3'
miRNA:   3'- cGCGACcGCgCUCUa--UGGGCGCGgCc -5'
15677 5' -60.8 NC_004065.1 + 24469 0.68 0.725951
Target:  5'- gGCaGCUcggacaugGGCGCGuAGAUgGCaCCGCcGCCGGc -3'
miRNA:   3'- -CG-CGA--------CCGCGC-UCUA-UG-GGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 107766 0.68 0.744185
Target:  5'- -aGCUGGCcgGCGGGGgguuaggACgCCGC-CCGGa -3'
miRNA:   3'- cgCGACCG--CGCUCUa------UG-GGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 70948 0.68 0.744185
Target:  5'- gGUGgaGGCG-GAGAUGuuggagaCgGCGCCGGa -3'
miRNA:   3'- -CGCgaCCGCgCUCUAUg------GgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 26360 0.66 0.847392
Target:  5'- gGCGCUGGCGacggcggcggggauaCGGGGcguuccccaUGCCCcCGCCu- -3'
miRNA:   3'- -CGCGACCGC---------------GCUCU---------AUGGGcGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 127460 0.66 0.844405
Target:  5'- aCGCugaUGGcCGCGGGAcccgACCCcgGCGCCa- -3'
miRNA:   3'- cGCG---ACC-GCGCUCUa---UGGG--CGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 106280 0.68 0.716725
Target:  5'- gGUGCUGGCGC-AGA-ACUCGCaCCGu -3'
miRNA:   3'- -CGCGACCGCGcUCUaUGGGCGcGGCc -5'
15677 5' -60.8 NC_004065.1 + 97246 0.7 0.622211
Target:  5'- gGCGCacGGCGCuucuGGcgACCuuCGCGCCGGu -3'
miRNA:   3'- -CGCGa-CCGCGc---UCuaUGG--GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 201361 0.7 0.612687
Target:  5'- cUGCU-GCGCGAGcUGCgCCuCGCCGGg -3'
miRNA:   3'- cGCGAcCGCGCUCuAUG-GGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 2092 0.7 0.584212
Target:  5'- cGCGCUGcGCGCGu-AUGCCgaGCGUgGGa -3'
miRNA:   3'- -CGCGAC-CGCGCucUAUGGg-CGCGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.