Results 101 - 117 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15677 | 5' | -60.8 | NC_004065.1 | + | 103784 | 0.66 | 0.843654 |
Target: 5'- aGCaGCUGGUgaucuccGCGAGcg--CCGCGCCGu -3' miRNA: 3'- -CG-CGACCG-------CGCUCuaugGGCGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 98670 | 0.66 | 0.844405 |
Target: 5'- uUGCUGaCGgGGGGgacGCCCGCGCgGa -3' miRNA: 3'- cGCGACcGCgCUCUa--UGGGCGCGgCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 127460 | 0.66 | 0.844405 |
Target: 5'- aCGCugaUGGcCGCGGGAcccgACCCcgGCGCCa- -3' miRNA: 3'- cGCG---ACC-GCGCUCUa---UGGG--CGCGGcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 17800 | 0.66 | 0.821176 |
Target: 5'- cGCGuUUGGCGCGAu---CCCGCGUg-- -3' miRNA: 3'- -CGC-GACCGCGCUcuauGGGCGCGgcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 76376 | 0.66 | 0.813126 |
Target: 5'- cGCGCcGGCGCcgccgcGGAUgaGCUCGCcGCCGu -3' miRNA: 3'- -CGCGaCCGCGc-----UCUA--UGGGCG-CGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 24469 | 0.68 | 0.725951 |
Target: 5'- gGCaGCUcggacaugGGCGCGuAGAUgGCaCCGCcGCCGGc -3' miRNA: 3'- -CG-CGA--------CCGCGC-UCUA-UG-GGCG-CGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 107766 | 0.68 | 0.744185 |
Target: 5'- -aGCUGGCcgGCGGGGgguuaggACgCCGC-CCGGa -3' miRNA: 3'- cgCGACCG--CGCUCUa------UG-GGCGcGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 70948 | 0.68 | 0.744185 |
Target: 5'- gGUGgaGGCG-GAGAUGuuggagaCgGCGCCGGa -3' miRNA: 3'- -CGCgaCCGCgCUCUAUg------GgCGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 90117 | 0.67 | 0.770878 |
Target: 5'- cCGCUGGCGCcgccggccgGAGGc-CCCGCgGCCa- -3' miRNA: 3'- cGCGACCGCG---------CUCUauGGGCG-CGGcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 124711 | 0.67 | 0.779571 |
Target: 5'- -aGCaGGUGCuucAGGUucagGCCCGCGCCGc -3' miRNA: 3'- cgCGaCCGCGc--UCUA----UGGGCGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 123526 | 0.67 | 0.78815 |
Target: 5'- cGgGCUGGUGUGgucguacaGGGUGgCCaGCGCCGc -3' miRNA: 3'- -CgCGACCGCGC--------UCUAUgGG-CGCGGCc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 225393 | 0.67 | 0.78815 |
Target: 5'- gGCGCUGGCGCuGAuGGUG-CCGCuCCc- -3' miRNA: 3'- -CGCGACCGCG-CU-CUAUgGGCGcGGcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 42673 | 0.66 | 0.804934 |
Target: 5'- aCGCUGaCGCGaAGcUGCUCGCGuUCGGa -3' miRNA: 3'- cGCGACcGCGC-UCuAUGGGCGC-GGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 113321 | 0.66 | 0.804934 |
Target: 5'- cGCGCcGGaCGCGGGAUcgaugAUCUaCGUCGGg -3' miRNA: 3'- -CGCGaCC-GCGCUCUA-----UGGGcGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 143117 | 0.66 | 0.804934 |
Target: 5'- cGCGCgccgccgaGG-GCGAGAccggcgccgcgACCUGCGUCGGu -3' miRNA: 3'- -CGCGa-------CCgCGCUCUa----------UGGGCGCGGCC- -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 27637 | 0.66 | 0.813126 |
Target: 5'- gGCGCUGcgcuGCGCGGGGgugcugcgGCCCGUcaucaagcuaGCCa- -3' miRNA: 3'- -CGCGAC----CGCGCUCUa-------UGGGCG----------CGGcc -5' |
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15677 | 5' | -60.8 | NC_004065.1 | + | 26360 | 0.66 | 0.847392 |
Target: 5'- gGCGCUGGCGacggcggcggggauaCGGGGcguuccccaUGCCCcCGCCu- -3' miRNA: 3'- -CGCGACCGC---------------GCUCU---------AUGGGcGCGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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