miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 85904 0.66 0.813126
Target:  5'- gGCGCUGGCgGUGAcGAU-CUgGUGCCu- -3'
miRNA:   3'- -CGCGACCG-CGCU-CUAuGGgCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 27637 0.66 0.813126
Target:  5'- gGCGCUGcgcuGCGCGGGGgugcugcgGCCCGUcaucaagcuaGCCa- -3'
miRNA:   3'- -CGCGAC----CGCGCUCUa-------UGGGCG----------CGGcc -5'
15677 5' -60.8 NC_004065.1 + 62105 0.66 0.813126
Target:  5'- cGCGCggGGCGCGAcaGcgGCgCGaCGCCu- -3'
miRNA:   3'- -CGCGa-CCGCGCU--CuaUGgGC-GCGGcc -5'
15677 5' -60.8 NC_004065.1 + 110225 0.66 0.813126
Target:  5'- aGCGCcaGGaCGuCGucGGAga-CCGCGCCGGa -3'
miRNA:   3'- -CGCGa-CC-GC-GC--UCUaugGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 76376 0.66 0.813126
Target:  5'- cGCGCcGGCGCcgccgcGGAUgaGCUCGCcGCCGu -3'
miRNA:   3'- -CGCGaCCGCGc-----UCUA--UGGGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 97789 0.66 0.813126
Target:  5'- gGCGCUGGCGCu-GA---UCGCGUCGu -3'
miRNA:   3'- -CGCGACCGCGcuCUaugGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 146040 0.66 0.812313
Target:  5'- cGUGCaUGaggaucuGUGCGAGc-GCCCGCGaCCGGc -3'
miRNA:   3'- -CGCG-AC-------CGCGCUCuaUGGGCGC-GGCC- -5'
15677 5' -60.8 NC_004065.1 + 113321 0.66 0.804934
Target:  5'- cGCGCcGGaCGCGGGAUcgaugAUCUaCGUCGGg -3'
miRNA:   3'- -CGCGaCC-GCGCUCUA-----UGGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 143117 0.66 0.804934
Target:  5'- cGCGCgccgccgaGG-GCGAGAccggcgccgcgACCUGCGUCGGu -3'
miRNA:   3'- -CGCGa-------CCgCGCUCUa----------UGGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 42673 0.66 0.804934
Target:  5'- aCGCUGaCGCGaAGcUGCUCGCGuUCGGa -3'
miRNA:   3'- cGCGACcGCGC-UCuAUGGGCGC-GGCC- -5'
15677 5' -60.8 NC_004065.1 + 126288 0.66 0.804934
Target:  5'- cGUGCUGaagguGgGCGAGcgGCUCgugGCGCUGGa -3'
miRNA:   3'- -CGCGAC-----CgCGCUCuaUGGG---CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 123526 0.67 0.78815
Target:  5'- cGgGCUGGUGUGgucguacaGGGUGgCCaGCGCCGc -3'
miRNA:   3'- -CgCGACCGCGC--------UCUAUgGG-CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 225393 0.67 0.78815
Target:  5'- gGCGCUGGCGCuGAuGGUG-CCGCuCCc- -3'
miRNA:   3'- -CGCGACCGCG-CU-CUAUgGGCGcGGcc -5'
15677 5' -60.8 NC_004065.1 + 27233 0.67 0.787297
Target:  5'- uGCuGCUGGCguuguuuuugGCGAGcuccggaGCCCGCcgcggccGCCGGa -3'
miRNA:   3'- -CG-CGACCG----------CGCUCua-----UGGGCG-------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 66395 0.67 0.779571
Target:  5'- -aGCUGGCGCcGGuccgcgGCCCagcGCGCCa- -3'
miRNA:   3'- cgCGACCGCGcUCua----UGGG---CGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 124711 0.67 0.779571
Target:  5'- -aGCaGGUGCuucAGGUucagGCCCGCGCCGc -3'
miRNA:   3'- cgCGaCCGCGc--UCUA----UGGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 173712 0.67 0.779571
Target:  5'- gGUGCUGGCGuCGAGcg--CCGCcaCCGGu -3'
miRNA:   3'- -CGCGACCGC-GCUCuaugGGCGc-GGCC- -5'
15677 5' -60.8 NC_004065.1 + 136511 0.67 0.779571
Target:  5'- aUGgaGGCgGCGAGAcaucuCCCGuCGUCGGu -3'
miRNA:   3'- cGCgaCCG-CGCUCUau---GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 177038 0.67 0.774369
Target:  5'- cGCGcCUcgccucaaaccuuggGGCGCGAGGagucuCCCGCGUCa- -3'
miRNA:   3'- -CGC-GA---------------CCGCGCUCUau---GGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 90117 0.67 0.770878
Target:  5'- cCGCUGGCGCcgccggccgGAGGc-CCCGCgGCCa- -3'
miRNA:   3'- cGCGACCGCG---------CUCUauGGGCG-CGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.