miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1568 3' -53 NC_001347.2 + 17022 0.67 0.985478
Target:  5'- gCAGGcgCGcGUGGUCCGCgGCGACu--- -3'
miRNA:   3'- -GUCCa-GUcUACCAGGUG-CGCUGuauc -5'
1568 3' -53 NC_001347.2 + 229130 0.67 0.983703
Target:  5'- aUAGGUgAGGuggguucccUGGUCCGCGCcGCAa-- -3'
miRNA:   3'- -GUCCAgUCU---------ACCAGGUGCGcUGUauc -5'
1568 3' -53 NC_001347.2 + 197235 0.67 0.983703
Target:  5'- gAGGUCGGA-GGUC-ACGCcACAUGa -3'
miRNA:   3'- gUCCAGUCUaCCAGgUGCGcUGUAUc -5'
1568 3' -53 NC_001347.2 + 155962 0.69 0.95205
Target:  5'- uCAGGaUCuGGUGcaggCCACGCGGCGUAu -3'
miRNA:   3'- -GUCC-AGuCUACca--GGUGCGCUGUAUc -5'
1568 3' -53 NC_001347.2 + 156819 0.71 0.893682
Target:  5'- cCAGGacgUCGGAgGGUCCGCGCGuCGg-- -3'
miRNA:   3'- -GUCC---AGUCUaCCAGGUGCGCuGUauc -5'
1568 3' -53 NC_001347.2 + 145638 0.76 0.674754
Target:  5'- gCGGGUguuuccCGGAgGGUCCGCGCGACAc-- -3'
miRNA:   3'- -GUCCA------GUCUaCCAGGUGCGCUGUauc -5'
1568 3' -53 NC_001347.2 + 191118 1.08 0.009906
Target:  5'- cCAGGUCAGAUGGUCCACGCGACAUAGc -3'
miRNA:   3'- -GUCCAGUCUACCAGGUGCGCUGUAUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.