miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1568 5' -60.2 NC_001347.2 + 102991 0.66 0.849605
Target:  5'- uCGCCGUGCUGCGUcuGguaacgcgcaucucaGCGCUG-CCgGg -3'
miRNA:   3'- -GCGGUACGGCGCA--C---------------UGCGACuGGgCa -5'
1568 5' -60.2 NC_001347.2 + 68119 0.66 0.846596
Target:  5'- gCGCCGUuCUuCGUGACGCUGuuCCUGc -3'
miRNA:   3'- -GCGGUAcGGcGCACUGCGACu-GGGCa -5'
1568 5' -60.2 NC_001347.2 + 68466 0.66 0.846596
Target:  5'- aGCCcUGCUGCGUcuuGGCGCcGGCCg-- -3'
miRNA:   3'- gCGGuACGGCGCA---CUGCGaCUGGgca -5'
1568 5' -60.2 NC_001347.2 + 39345 0.66 0.839723
Target:  5'- gCGCCcgGCggccCGCGggguucuacccggugGACGCcgUGGCCCGg -3'
miRNA:   3'- -GCGGuaCG----GCGCa--------------CUGCG--ACUGGGCa -5'
1568 5' -60.2 NC_001347.2 + 80463 0.66 0.83895
Target:  5'- aCGCCGUaUCGCGUGACuguacgaugauCUGGCCCu- -3'
miRNA:   3'- -GCGGUAcGGCGCACUGc----------GACUGGGca -5'
1568 5' -60.2 NC_001347.2 + 156438 0.66 0.83895
Target:  5'- aCGCCAagaaaGCCGCGUcGACGUcguUGGCgguCCGg -3'
miRNA:   3'- -GCGGUa----CGGCGCA-CUGCG---ACUG---GGCa -5'
1568 5' -60.2 NC_001347.2 + 2247 0.66 0.838176
Target:  5'- gCGCCAUGCUG-GUGGUGCUGcuggacgagcuggGCgCCGUg -3'
miRNA:   3'- -GCGGUACGGCgCACUGCGAC-------------UG-GGCA- -5'
1568 5' -60.2 NC_001347.2 + 139473 0.66 0.831137
Target:  5'- gGCgGUG-CGCGUGcCGUUGuACCCGc -3'
miRNA:   3'- gCGgUACgGCGCACuGCGAC-UGGGCa -5'
1568 5' -60.2 NC_001347.2 + 226765 0.66 0.831137
Target:  5'- uCGgCAUGCCGC-UGAuCGCagUGGCCCc- -3'
miRNA:   3'- -GCgGUACGGCGcACU-GCG--ACUGGGca -5'
1568 5' -60.2 NC_001347.2 + 147897 0.66 0.815033
Target:  5'- aGCCAUugggGCCGUggGUGGCGCggUGGCcuCCGUg -3'
miRNA:   3'- gCGGUA----CGGCG--CACUGCG--ACUG--GGCA- -5'
1568 5' -60.2 NC_001347.2 + 180429 0.66 0.815033
Target:  5'- -aCCcgGCUGCacGUGGC-CUGGCCCGa -3'
miRNA:   3'- gcGGuaCGGCG--CACUGcGACUGGGCa -5'
1568 5' -60.2 NC_001347.2 + 127463 0.66 0.815033
Target:  5'- aGCUAUGUCGCGgacuacGACGCgucugGAUgaCCGUa -3'
miRNA:   3'- gCGGUACGGCGCa-----CUGCGa----CUG--GGCA- -5'
1568 5' -60.2 NC_001347.2 + 57758 0.66 0.814212
Target:  5'- uGCUAUGUCuuagaggagacuaGUGUGAUGCUGGCCa-- -3'
miRNA:   3'- gCGGUACGG-------------CGCACUGCGACUGGgca -5'
1568 5' -60.2 NC_001347.2 + 99141 0.66 0.806755
Target:  5'- aGCCGcgGCgCGCGU-ACGCcgaGACCCGa -3'
miRNA:   3'- gCGGUa-CG-GCGCAcUGCGa--CUGGGCa -5'
1568 5' -60.2 NC_001347.2 + 184429 0.67 0.798335
Target:  5'- gCGCCggGUCGCuGUGACGgaG-CUCGUc -3'
miRNA:   3'- -GCGGuaCGGCG-CACUGCgaCuGGGCA- -5'
1568 5' -60.2 NC_001347.2 + 105417 0.67 0.781102
Target:  5'- gGCC-UGCUGCGcaauaUGACGCUGACgUUGa -3'
miRNA:   3'- gCGGuACGGCGC-----ACUGCGACUG-GGCa -5'
1568 5' -60.2 NC_001347.2 + 39159 0.67 0.754376
Target:  5'- gCGUCGcGCUGCGaccacuugcgcaUGGCGC-GGCCCGUg -3'
miRNA:   3'- -GCGGUaCGGCGC------------ACUGCGaCUGGGCA- -5'
1568 5' -60.2 NC_001347.2 + 142250 0.67 0.754376
Target:  5'- uCGUgGaugGCUGCGaGGCGCUGGCCgCGUc -3'
miRNA:   3'- -GCGgUa--CGGCGCaCUGCGACUGG-GCA- -5'
1568 5' -60.2 NC_001347.2 + 151332 0.67 0.754376
Target:  5'- gGCCugacGCCGCaggcucugGUGGCGCgugGGCCCa- -3'
miRNA:   3'- gCGGua--CGGCG--------CACUGCGa--CUGGGca -5'
1568 5' -60.2 NC_001347.2 + 63212 0.67 0.754376
Target:  5'- aGCCAccaccgGCCGC-UGACGCUGuuuACgCCGg -3'
miRNA:   3'- gCGGUa-----CGGCGcACUGCGAC---UG-GGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.