miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15680 3' -56.3 NC_004065.1 + 168469 0.66 0.957881
Target:  5'- -aUCUUCgUCc-CGUCGGUGGGggUUa -3'
miRNA:   3'- ugAGAAGgAGaaGCGGCCGCCCuuGG- -5'
15680 3' -56.3 NC_004065.1 + 174575 0.66 0.954193
Target:  5'- -aUCUcCCUgaUCGCauucGCGGGGACCc -3'
miRNA:   3'- ugAGAaGGAgaAGCGgc--CGCCCUUGG- -5'
15680 3' -56.3 NC_004065.1 + 61796 0.66 0.953813
Target:  5'- uCUCggCCuUCUaccgcgacugcgaUCGCCuGCGGGAugCu -3'
miRNA:   3'- uGAGaaGG-AGA-------------AGCGGcCGCCCUugG- -5'
15680 3' -56.3 NC_004065.1 + 113082 0.66 0.950293
Target:  5'- -aUCUUCUUC-UCGCUGGgaacgguguaCGGGcACCg -3'
miRNA:   3'- ugAGAAGGAGaAGCGGCC----------GCCCuUGG- -5'
15680 3' -56.3 NC_004065.1 + 91483 0.66 0.950293
Target:  5'- cGCUCUaUCCcuacacucUCUUCuCCGGCGGc-GCCg -3'
miRNA:   3'- -UGAGA-AGG--------AGAAGcGGCCGCCcuUGG- -5'
15680 3' -56.3 NC_004065.1 + 789 0.66 0.946178
Target:  5'- cGCUCgucgcggaagCUUCacaCGCUGGCGGGGcGCCu -3'
miRNA:   3'- -UGAGaa--------GGAGaa-GCGGCCGCCCU-UGG- -5'
15680 3' -56.3 NC_004065.1 + 19663 0.66 0.946178
Target:  5'- cCUCcgCCga--CGCCGGCGGGuAACg -3'
miRNA:   3'- uGAGaaGGagaaGCGGCCGCCC-UUGg -5'
15680 3' -56.3 NC_004065.1 + 55429 0.66 0.946178
Target:  5'- cGCUCUccuUCCUCUcUC-CCGGggagaagagggcCGGGAACg -3'
miRNA:   3'- -UGAGA---AGGAGA-AGcGGCC------------GCCCUUGg -5'
15680 3' -56.3 NC_004065.1 + 120451 0.66 0.941844
Target:  5'- cCUCUUgCUg-UCgGgCGGCGGGAACUc -3'
miRNA:   3'- uGAGAAgGAgaAG-CgGCCGCCCUUGG- -5'
15680 3' -56.3 NC_004065.1 + 117947 0.67 0.93729
Target:  5'- cGCUCUUCUuccgcgUCUUCGUCucuGCGGuuACCg -3'
miRNA:   3'- -UGAGAAGG------AGAAGCGGc--CGCCcuUGG- -5'
15680 3' -56.3 NC_004065.1 + 195480 0.67 0.932515
Target:  5'- -gUCUgagUCgCUC-UCGCUGucGCGGGAGCCc -3'
miRNA:   3'- ugAGA---AG-GAGaAGCGGC--CGCCCUUGG- -5'
15680 3' -56.3 NC_004065.1 + 90965 0.67 0.929543
Target:  5'- aACUCgaUCCUCUaccagacgcggaucgUguucgugcccagCGCCGGCaaGGGGGCCa -3'
miRNA:   3'- -UGAGa-AGGAGA---------------A------------GCGGCCG--CCCUUGG- -5'
15680 3' -56.3 NC_004065.1 + 78678 0.67 0.927517
Target:  5'- cCUCUccuccuuccUCCUCUUCucgGUCGGCGGcGucCCg -3'
miRNA:   3'- uGAGA---------AGGAGAAG---CGGCCGCC-CuuGG- -5'
15680 3' -56.3 NC_004065.1 + 189749 0.67 0.927517
Target:  5'- gGCUCaugUCUUCguacCCGGCGGGGcGCCc -3'
miRNA:   3'- -UGAGa--AGGAGaagcGGCCGCCCU-UGG- -5'
15680 3' -56.3 NC_004065.1 + 102400 0.67 0.922297
Target:  5'- cACUCagcgCCUCgUCGaCGGaCGGGAggaGCCg -3'
miRNA:   3'- -UGAGaa--GGAGaAGCgGCC-GCCCU---UGG- -5'
15680 3' -56.3 NC_004065.1 + 188607 0.67 0.920687
Target:  5'- uCUCggUCCgucacgggaccgugUCGCCGGCGGcGAGCa -3'
miRNA:   3'- uGAGa-AGGaga-----------AGCGGCCGCC-CUUGg -5'
15680 3' -56.3 NC_004065.1 + 25963 0.68 0.911188
Target:  5'- aGCUCUagggaUCCcCg--GCCGGCGGcauGAGCCa -3'
miRNA:   3'- -UGAGA-----AGGaGaagCGGCCGCC---CUUGG- -5'
15680 3' -56.3 NC_004065.1 + 201475 0.68 0.911188
Target:  5'- aGCUCgcgggUCCUCUgcacgcacgUCGCCGcGCcgcccgagccGGGAcgcGCCg -3'
miRNA:   3'- -UGAGa----AGGAGA---------AGCGGC-CG----------CCCU---UGG- -5'
15680 3' -56.3 NC_004065.1 + 160949 0.68 0.899199
Target:  5'- ----aUCgUgUUCGUCGGCGGGAaACCc -3'
miRNA:   3'- ugagaAGgAgAAGCGGCCGCCCU-UGG- -5'
15680 3' -56.3 NC_004065.1 + 111248 0.68 0.892879
Target:  5'- cGCUCgaucgCCUCUgccUCGUCGGCGccguGACCg -3'
miRNA:   3'- -UGAGaa---GGAGA---AGCGGCCGCcc--UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.