miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15681 3' -59.5 NC_004065.1 + 147158 0.66 0.883245
Target:  5'- uGCGCGgggagcuguggGCGAGgcguUGGAGGaaaGCGUCg -3'
miRNA:   3'- -CGCGCa----------CGCUCacc-ACCUCCg--UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 200962 0.66 0.872455
Target:  5'- aGCGCG-GCGGcuccaggaucggugcGUGGUGacGGGUcgcgACGCCg -3'
miRNA:   3'- -CGCGCaCGCU---------------CACCACc-UCCG----UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 1844 0.66 0.86968
Target:  5'- uGUGCGagaauacgGCGAGacGGaGGucgcucgcAGGCACGCCg -3'
miRNA:   3'- -CGCGCa-------CGCUCa-CCaCC--------UCCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 126755 0.66 0.86261
Target:  5'- cGCGCGgcgcaugGCGAcgcgGGUGca-GCGCGCCa -3'
miRNA:   3'- -CGCGCa------CGCUca--CCACcucCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 71022 0.66 0.86261
Target:  5'- gGC-CGUGauguaGGGcagGGUGGuGGC-CGCCg -3'
miRNA:   3'- -CGcGCACg----CUCa--CCACCuCCGuGCGG- -5'
15681 3' -59.5 NC_004065.1 + 19560 0.66 0.86261
Target:  5'- cUGCGUGgGuGUcGGUGGcGGCgguaGCGUCg -3'
miRNA:   3'- cGCGCACgCuCA-CCACCuCCG----UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 229477 0.66 0.86261
Target:  5'- uGCGCGaacaGGG-GGcgcucgcacaGGGGGCGCGCCa -3'
miRNA:   3'- -CGCGCacg-CUCaCCa---------CCUCCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 199285 0.66 0.86261
Target:  5'- uGUGUGUGCGccggGGUGGcgagaugGaGAGGCcggugacggcgaACGCCa -3'
miRNA:   3'- -CGCGCACGC----UCACCa------C-CUCCG------------UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 201808 0.66 0.855355
Target:  5'- -aGCG-GCGAGUuGUGGcgucuGGCcgacaGCGCCg -3'
miRNA:   3'- cgCGCaCGCUCAcCACCu----CCG-----UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 78899 0.67 0.840309
Target:  5'- uGCGCuG-GCGgccgaucucuugGGUGGcGGAGGCGgGUCg -3'
miRNA:   3'- -CGCG-CaCGC------------UCACCaCCUCCGUgCGG- -5'
15681 3' -59.5 NC_004065.1 + 33169 0.67 0.840309
Target:  5'- aCGCGcGCGAGcGGacUGGAGgaaccgaaguGCACGUCg -3'
miRNA:   3'- cGCGCaCGCUCaCC--ACCUC----------CGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 62392 0.67 0.824589
Target:  5'- -gGCG-GCGGG-GGUGGcGGC-CGCg -3'
miRNA:   3'- cgCGCaCGCUCaCCACCuCCGuGCGg -5'
15681 3' -59.5 NC_004065.1 + 119438 0.67 0.816492
Target:  5'- --cCGUGCGcGUGGUGGucGCcgagaccgACGCCu -3'
miRNA:   3'- cgcGCACGCuCACCACCucCG--------UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 134151 0.67 0.809077
Target:  5'- uCGCuccGCGAG-GGUGGcccgucguuccgcccGGCGCGCCg -3'
miRNA:   3'- cGCGca-CGCUCaCCACCu--------------CCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 177769 0.67 0.808246
Target:  5'- cGCGCGgugGCG-GUGGUGcagaGAGuGC-CGCUc -3'
miRNA:   3'- -CGCGCa--CGCuCACCAC----CUC-CGuGCGG- -5'
15681 3' -59.5 NC_004065.1 + 92530 0.68 0.791333
Target:  5'- cGCGCGcGCGuacgGGcgGGcGGGCGCGCg -3'
miRNA:   3'- -CGCGCaCGCuca-CCa-CC-UCCGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 58328 0.68 0.782681
Target:  5'- cGCGCaagGCGGGcGGUGGcGGCgGCGgCg -3'
miRNA:   3'- -CGCGca-CGCUCaCCACCuCCG-UGCgG- -5'
15681 3' -59.5 NC_004065.1 + 124216 0.68 0.773909
Target:  5'- -gGCGUGCGgugccAGUGGUGGuacucGUGCGCg -3'
miRNA:   3'- cgCGCACGC-----UCACCACCuc---CGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 75957 0.68 0.773909
Target:  5'- aCGCGaagauacGCaGGaGGUGGGGGCGCgGCCa -3'
miRNA:   3'- cGCGCa------CGcUCaCCACCUCCGUG-CGG- -5'
15681 3' -59.5 NC_004065.1 + 24814 0.68 0.773909
Target:  5'- -aGCGagagcccuuuCGGGUGGUGGAGacGCACGCg -3'
miRNA:   3'- cgCGCac--------GCUCACCACCUC--CGUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.