miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15681 3' -59.5 NC_004065.1 + 27784 1.13 0.001235
Target:  5'- gGCGCGUGCGAGUGGUGGAGGCACGCCg -3'
miRNA:   3'- -CGCGCACGCUCACCACCUCCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 26286 0.76 0.322571
Target:  5'- cCGCGUGCGAGccgcUGGUGGAcG-ACGCCg -3'
miRNA:   3'- cGCGCACGCUC----ACCACCUcCgUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 65700 0.75 0.366143
Target:  5'- cGgGCGUGCGAGcUGGUGGA--CGCGCa -3'
miRNA:   3'- -CgCGCACGCUC-ACCACCUccGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 19759 0.74 0.421877
Target:  5'- gGgGCGUGCGGG-GGUGuGGGCGacggaGCCg -3'
miRNA:   3'- -CgCGCACGCUCaCCACcUCCGUg----CGG- -5'
15681 3' -59.5 NC_004065.1 + 23616 0.74 0.430247
Target:  5'- gGCGgGcagGCGGGUGGacgGGcGGCugGCCu -3'
miRNA:   3'- -CGCgCa--CGCUCACCa--CCuCCGugCGG- -5'
15681 3' -59.5 NC_004065.1 + 44804 0.73 0.509623
Target:  5'- gGUG-GUGCGGGUcG-GGAGGCAgCGCCg -3'
miRNA:   3'- -CGCgCACGCUCAcCaCCUCCGU-GCGG- -5'
15681 3' -59.5 NC_004065.1 + 45820 0.72 0.556295
Target:  5'- cCGCGUGCGGGUGGgcauguaucGGAccGGC-CGCa -3'
miRNA:   3'- cGCGCACGCUCACCa--------CCU--CCGuGCGg -5'
15681 3' -59.5 NC_004065.1 + 139620 0.72 0.565789
Target:  5'- cCGCGUcGUcGGUGGUGGAGa-GCGCCg -3'
miRNA:   3'- cGCGCA-CGcUCACCACCUCcgUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 88967 0.71 0.575324
Target:  5'- cGCGCGUGauGGUGGccaccUGGGGcGCcuugACGCCg -3'
miRNA:   3'- -CGCGCACgcUCACC-----ACCUC-CG----UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 97043 0.71 0.584894
Target:  5'- uGCGCGUGCGAgcucuccugguGUGGUGGcgauGGUgauUGCUg -3'
miRNA:   3'- -CGCGCACGCU-----------CACCACCu---CCGu--GCGG- -5'
15681 3' -59.5 NC_004065.1 + 64127 0.71 0.623422
Target:  5'- gGUGaCGUGCGGGUGGUGGuccuucGCgaACGCg -3'
miRNA:   3'- -CGC-GCACGCUCACCACCuc----CG--UGCGg -5'
15681 3' -59.5 NC_004065.1 + 134931 0.7 0.67166
Target:  5'- cGCGaCGU-CGAGUGGUGGaAGG-ACGUg -3'
miRNA:   3'- -CGC-GCAcGCUCACCACC-UCCgUGCGg -5'
15681 3' -59.5 NC_004065.1 + 50301 0.69 0.694613
Target:  5'- cGCGCGgcgaucGCGAGgcaacaacagagaGUGGuGGCACGCg -3'
miRNA:   3'- -CGCGCa-----CGCUCac-----------CACCuCCGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 197423 0.69 0.709773
Target:  5'- cCGCG-GgGAGcuggcgucccUGGUcGaGAGGCGCGCCg -3'
miRNA:   3'- cGCGCaCgCUC----------ACCA-C-CUCCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 16530 0.69 0.709773
Target:  5'- gGUcUGUGUGAG-GGUGGc-GCACGCCu -3'
miRNA:   3'- -CGcGCACGCUCaCCACCucCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 202462 0.69 0.728507
Target:  5'- cUGUGU-CGGGUaccccccggGGUGGuGGCugGCCg -3'
miRNA:   3'- cGCGCAcGCUCA---------CCACCuCCGugCGG- -5'
15681 3' -59.5 NC_004065.1 + 119192 0.69 0.728507
Target:  5'- cCGUGaGCGAGUc-UGGAGGCGUGCCg -3'
miRNA:   3'- cGCGCaCGCUCAccACCUCCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 44524 0.68 0.746945
Target:  5'- gGCGCGaUGUuaccGGGgacGGUGGcGGCGCuGCCu -3'
miRNA:   3'- -CGCGC-ACG----CUCa--CCACCuCCGUG-CGG- -5'
15681 3' -59.5 NC_004065.1 + 24814 0.68 0.773909
Target:  5'- -aGCGagagcccuuuCGGGUGGUGGAGacGCACGCg -3'
miRNA:   3'- cgCGCac--------GCUCACCACCUC--CGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 124216 0.68 0.773909
Target:  5'- -gGCGUGCGgugccAGUGGUGGuacucGUGCGCg -3'
miRNA:   3'- cgCGCACGC-----UCACCACCuc---CGUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.