miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15681 3' -59.5 NC_004065.1 + 88967 0.71 0.575324
Target:  5'- cGCGCGUGauGGUGGccaccUGGGGcGCcuugACGCCg -3'
miRNA:   3'- -CGCGCACgcUCACC-----ACCUC-CG----UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 92530 0.68 0.791333
Target:  5'- cGCGCGcGCGuacgGGcgGGcGGGCGCGCg -3'
miRNA:   3'- -CGCGCaCGCuca-CCa-CC-UCCGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 97043 0.71 0.584894
Target:  5'- uGCGCGUGCGAgcucuccugguGUGGUGGcgauGGUgauUGCUg -3'
miRNA:   3'- -CGCGCACGCU-----------CACCACCu---CCGu--GCGG- -5'
15681 3' -59.5 NC_004065.1 + 119192 0.69 0.728507
Target:  5'- cCGUGaGCGAGUc-UGGAGGCGUGCCg -3'
miRNA:   3'- cGCGCaCGCUCAccACCUCCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 119438 0.67 0.816492
Target:  5'- --cCGUGCGcGUGGUGGucGCcgagaccgACGCCu -3'
miRNA:   3'- cgcGCACGCuCACCACCucCG--------UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 124216 0.68 0.773909
Target:  5'- -gGCGUGCGgugccAGUGGUGGuacucGUGCGCg -3'
miRNA:   3'- cgCGCACGC-----UCACCACCuc---CGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 126755 0.66 0.86261
Target:  5'- cGCGCGgcgcaugGCGAcgcgGGUGca-GCGCGCCa -3'
miRNA:   3'- -CGCGCa------CGCUca--CCACcucCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 134151 0.67 0.809077
Target:  5'- uCGCuccGCGAG-GGUGGcccgucguuccgcccGGCGCGCCg -3'
miRNA:   3'- cGCGca-CGCUCaCCACCu--------------CCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 134931 0.7 0.67166
Target:  5'- cGCGaCGU-CGAGUGGUGGaAGG-ACGUg -3'
miRNA:   3'- -CGC-GCAcGCUCACCACC-UCCgUGCGg -5'
15681 3' -59.5 NC_004065.1 + 139620 0.72 0.565789
Target:  5'- cCGCGUcGUcGGUGGUGGAGa-GCGCCg -3'
miRNA:   3'- cGCGCA-CGcUCACCACCUCcgUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 147158 0.66 0.883245
Target:  5'- uGCGCGgggagcuguggGCGAGgcguUGGAGGaaaGCGUCg -3'
miRNA:   3'- -CGCGCa----------CGCUCacc-ACCUCCg--UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 177769 0.67 0.808246
Target:  5'- cGCGCGgugGCG-GUGGUGcagaGAGuGC-CGCUc -3'
miRNA:   3'- -CGCGCa--CGCuCACCAC----CUC-CGuGCGG- -5'
15681 3' -59.5 NC_004065.1 + 197423 0.69 0.709773
Target:  5'- cCGCG-GgGAGcuggcgucccUGGUcGaGAGGCGCGCCg -3'
miRNA:   3'- cGCGCaCgCUC----------ACCA-C-CUCCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 199285 0.66 0.86261
Target:  5'- uGUGUGUGCGccggGGUGGcgagaugGaGAGGCcggugacggcgaACGCCa -3'
miRNA:   3'- -CGCGCACGC----UCACCa------C-CUCCG------------UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 200962 0.66 0.872455
Target:  5'- aGCGCG-GCGGcuccaggaucggugcGUGGUGacGGGUcgcgACGCCg -3'
miRNA:   3'- -CGCGCaCGCU---------------CACCACc-UCCG----UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 201808 0.66 0.855355
Target:  5'- -aGCG-GCGAGUuGUGGcgucuGGCcgacaGCGCCg -3'
miRNA:   3'- cgCGCaCGCUCAcCACCu----CCG-----UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 202462 0.69 0.728507
Target:  5'- cUGUGU-CGGGUaccccccggGGUGGuGGCugGCCg -3'
miRNA:   3'- cGCGCAcGCUCA---------CCACCuCCGugCGG- -5'
15681 3' -59.5 NC_004065.1 + 229477 0.66 0.86261
Target:  5'- uGCGCGaacaGGG-GGcgcucgcacaGGGGGCGCGCCa -3'
miRNA:   3'- -CGCGCacg-CUCaCCa---------CCUCCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.